48 lines
1.3 KiB
Makefile
48 lines
1.3 KiB
Makefile
PORTNAME= transdecoder
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DISTVERSIONPREFIX= TransDecoder-v
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DISTVERSION= 5.7.0
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CATEGORIES= biology perl5
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PKGNAMEPREFIX= p5-
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MAINTAINER= jwb@FreeBSD.org
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COMMENT= Identify candidate coding regions within transcript sequences
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WWW= https://transdecoder.github.io/
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LICENSE= BSD3CLAUSE
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RUN_DEPENDS= cd-hit>=4.6.1:biology/cd-hit \
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p5-URI>0:net/p5-URI
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USES= perl5 shebangfix
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USE_GITHUB= yes
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GH_PROJECT= TransDecoder
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SHEBANG_FILES= sample_data/cufflinks_example/runMe.sh \
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sample_data/pasa_example/runMe.sh \
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sample_data/simple_transcriptome_target/runMe.sh \
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util/pfam_mpi.pbs
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NO_BUILD= yes
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NO_ARCH= yes
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PERL_MOD_DIR= ${PREFIX}/${SITE_PERL_REL}/${PORTNAME}
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PERL_UTIL_DIR= ${PREFIX}/libexec/${PORTNAME}
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SCRIPTS= ${WRKSRC}/TransDecoder.LongOrfs \
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${WRKSRC}/TransDecoder.Predict
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post-patch:
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@${REINPLACE_CMD} \
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-e 's|$$FindBin::RealBin/PerlLib|${PERL_MOD_DIR}|g' \
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-e 's|$$FindBin::Bin/../PerlLib|${PERL_MOD_DIR}|g' \
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-e 's|$$FindBin::RealBin/util|${PERL_UTIL_DIR}|g' \
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${SCRIPTS} \
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${WRKSRC}/util/*.pl
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do-install:
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@${MKDIR} ${STAGEDIR}${PERL_MOD_DIR} ${STAGEDIR}${PERL_UTIL_DIR}
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${INSTALL_SCRIPT} ${WRKSRC}/PerlLib/* ${STAGEDIR}${PERL_MOD_DIR}
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${INSTALL_SCRIPT} ${SCRIPTS} ${STAGEDIR}${PREFIX}/bin
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${INSTALL_SCRIPT} ${WRKSRC}/util/*.pl ${STAGEDIR}${PERL_UTIL_DIR}
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.include <bsd.port.mk>
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