befa71e0f3
Changes: http://www.boost.org/users/history/version_1_71_0.html PR: 238827 Exp-run by: antoine Differential Revision: https://reviews.freebsd.org/D20774
42 lines
1.0 KiB
Makefile
42 lines
1.0 KiB
Makefile
# $FreeBSD$
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PORTNAME= cufflinks
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DISTVERSIONPREFIX= v
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DISTVERSION= 2.2.1-83
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DISTVERSIONSUFFIX= -gb4fa050
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PORTREVISION= 1
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CATEGORIES= biology
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MAINTAINER= yuri@FreeBSD.org
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COMMENT= Cufflinks assembles transcripts, estimates their abundance, etc
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LICENSE= BSL
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LICENSE_FILE= ${WRKSRC}/LICENSE
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LIB_DEPENDS= libboost_system.so:devel/boost-libs \
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libhts.so:biology/htslib
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USES= autoreconf eigen:3 gmake python shebangfix
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SHEBANG_FILES= src/cuffmerge
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GNU_CONFIGURE= yes
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USE_GITHUB= yes
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GH_ACCOUNT= cole-trapnell-lab
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CXXFLAGS+= -I${LOCALBASE}/include/eigen3
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CFLAGS+= -I${LOCALBASE}/include/eigen3 # https://github.com/cole-trapnell-lab/cufflinks/issues/113
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PLIST_FILES= bin/compress_gtf \
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bin/cuffcompare \
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bin/cuffdiff \
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bin/cufflinks \
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bin/cuffmerge \
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bin/cuffnorm \
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bin/cuffquant \
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bin/gffread \
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bin/gtf_to_sam
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post-patch: # https://github.com/cole-trapnell-lab/cufflinks/issues/116
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@${GREP} -rl 'fabs(' ${WRKSRC} | ${GREP} "\.cpp$$" | ${XARGS} ${REINPLACE_CMD} 's|std::fabs(|fabs(| ; s|fabs(|::fabs(|'
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.include <bsd.port.mk>
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