freebsd-ports/science
Dmitry Sivachenko 72ae287b25 Release.
2019-11-11 12:00:44 +00:00
..
2d-rewriter Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
abinit Mark a few ports BROKEN (unfetchable) 2019-11-06 16:26:34 +00:00
afni math/gsl: update to 2.6 2019-10-25 23:41:34 +00:00
agrum science/agrum: Update 0.15.2 -> 0.16.3 2019-10-31 05:46:54 +00:00
aircraft-datcom
ALPSCore
antioch math/gsl: update to 2.6 2019-10-25 23:41:34 +00:00
apbs
atom
atompaw
avogadro2
avogadrolibs
bagel
bddsolve
berkeleygw
bodr
brian
buddy
cdcl Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
cdf
cdo
cgnslib Add USES=xorg and USES=gl 2019-11-07 18:41:56 +00:00
cgribex science/cgribex: Spell SZIP_CONFIGURE_OFF correctly 2019-10-20 08:46:09 +00:00
checkmol Mark a few ports BROKEN (unfetchable) 2019-11-06 16:26:34 +00:00
chemical-mime-data print, science: Add missing USES=gnome 2019-11-08 13:22:59 +00:00
chemps2
chemtool Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
chemtool-devel Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
chrono devel/openmp: update to 9.0.0 2019-09-21 18:59:57 +00:00
clhep
clipper
code_saturne devel/openmp: update to 9.0.0 2019-09-21 18:59:57 +00:00
colt
coordgenlibs
coot Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
cp2k Mark a few ports BROKEN (unfetchable) 2019-11-06 16:26:34 +00:00
cp2k-data
crf++
dalton
datawarrior Mark a few ports BROKEN (unfetchable) 2019-11-06 16:26:34 +00:00
dcl Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
devisor
dftbplus
dkh
dlib-cpp Add USES=xorg and USES=gl 2019-11-07 18:41:56 +00:00
dlpoly-classic Mark a few ports BROKEN (unfetchable) 2019-11-06 16:26:34 +00:00
drawxtl Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
dvc
eccodes Update to 2.14.1 2019-11-04 15:58:47 +00:00
elk
epte
erd
erkale Unmark broken on aarch64. 2019-11-08 03:28:41 +00:00
erkale-pseudopotentials
esys-particle
fastcap
fasthenry
fisicalab math/gsl: update to 2.6 2019-10-25 23:41:34 +00:00
fleur science/fleur: Spell HDF5_CMAKE_ON correctly 2019-10-06 08:37:06 +00:00
fsom
fvcom
fvcom-mpi
gabedit Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
gamess-us
gchemutils Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
gdma
getdp math/gsl: update to 2.6 2019-10-25 23:41:34 +00:00
ghemical Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
ghmm print, science: Add missing USES=gnome 2019-11-08 13:22:59 +00:00
gnudatalanguage Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
gpaw-setups
gramps
grib_api
gromacs science/gromacs: Update 2019.3 -> 2019.4 2019-10-05 22:57:39 +00:00
gsmc print, science: Add missing USES=gnome 2019-11-08 13:22:59 +00:00
gtamsanalyzer
gwyddion print, science: Add missing USES=gnome 2019-11-08 13:22:59 +00:00
h5utils
h5z-zfp
harminv
hdf
hdf5 Add PARALLEL option 2019-09-30 11:32:04 +00:00
hdf5-18
healpix
highfive science/highfive: Update 2.1 -> 2.1.1 2019-11-10 16:16:55 +00:00
hypre
iboview Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
InsightToolkit - Update devel/gdcm to 3.0.4. 2019-10-19 23:45:10 +00:00
isaac-cfd
jdftx math/gsl: update to 2.6 2019-10-25 23:41:34 +00:00
jmol Mark a few ports BROKEN (unfetchable) 2019-11-06 16:26:34 +00:00
jstrack Update to version 3.4.0, which includes updated documentation, links to 2019-10-02 16:14:46 +00:00
kalzium KDE Applications: update to 19.08.3 2019-11-09 08:13:40 +00:00
kim-api
kst2 math/gsl: update to 2.6 2019-10-25 23:41:34 +00:00
lammps science/lammps: Update 19Sep2019 -> 30Oct2019 2019-10-31 05:31:37 +00:00
lamprop
latte devel/openmp: update to 9.0.0 2019-09-21 18:59:57 +00:00
libaec
libccp4
libcint
libctl
libefp
libgeodecomp
libghemical Pet portlint (trailing whitespace). 2019-11-08 03:23:25 +00:00
libgridxc
libint
libint2
libkml devel/google{test,mock}: update to 1.10.0 2019-10-05 00:42:20 +00:00
liblinear
libmsym
liboglappth Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
libquantum
libssm
libsvm
libsvm-python
libvdwxc
libxc
liggghts Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
lm
luscus Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
madness Update devel/tbb to 2019.8 and bump dependent ports' revisions 2019-09-25 10:03:49 +00:00
maeparser science/maeparser: Update 1.2.1 -> 1.2.2 2019-10-13 15:15:08 +00:00
massxpert Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
mbdyn
mcstas
mcstas-comps
mcxtrace
mcxtrace-comps
mdynamix
medit Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
meep math/gsl: update to 2.6 2019-10-25 23:41:34 +00:00
metaphysicl science/metaphysicl: 0.5.2 -> 0.6.0 2019-10-13 21:17:17 +00:00
minc2
mmdb2
mmtf-cpp
mol2ps
molgif Go ports: cleanup, finish transition to USES=go started with r505321 (cat. misc-shells) 2019-09-29 22:31:57 +00:00
molscript Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
molsketch
mpb
mpqc Unmark these ports broken on aarch64. 2019-11-08 03:54:11 +00:00
msms
multiwfn
namd
ncnn science/ncnn: enable Vulkan support 2019-10-20 00:48:10 +00:00
nest math/gsl: update to 2.6 2019-10-25 23:41:34 +00:00
netcdf Update to 4.7.2 2019-10-23 17:44:44 +00:00
netcdf-cxx
netcdf-fortran Update to 4.5.2 2019-09-26 18:13:09 +00:00
nifticlib
nwchem
nwchem-data
octopus Mark a few ports BROKEN (unfetchable) 2019-11-06 16:26:34 +00:00
openbabel
openkim
openkim-models
openmx Mark a few ports BROKEN (unfetchable) 2019-11-06 16:26:34 +00:00
opensim-core Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
opensph
opsin
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB Mark a few ports BROKEN (unfetchable) 2019-11-06 16:26:34 +00:00
p5-Geo-WebService-Elevation-USGS Update to 0.116 2019-10-28 14:57:46 +00:00
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit
packmol science/packmol: Pack molecules in defined regions of space 2019-09-22 19:06:43 +00:00
pagmo2
paje
paraview Unbreak 2019-11-07 17:28:56 +00:00
pcmsolver science/pcmsolver: fix build on GCC architectures 2019-10-27 19:19:07 +00:00
PETSc Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
pnetcdf
psychopy
pulseview
py-abipy
py-asdf Change RUN_DEPENDS from py-semantic_version to py-semantic_version26 2019-09-26 18:16:28 +00:00
py-ase science/py-ase: Update 3.18.0 -> 3.18.1 2019-09-21 14:18:58 +00:00
py-avogadrolibs
py-cdo
py-chainer science/py-chainer: Update 6.4.0 -> 6.5.0 2019-10-29 03:28:14 +00:00
py-chainer-chemistry science/py-chainer-chemistry: Update 0.5.0 -> 0.6.0 2019-10-06 17:48:09 +00:00
py-chempy science/py-chempy: Update 0.7.8 -> 0.7.9 2019-10-12 15:55:43 +00:00
py-coards
py-DendroPy
py-dlib Add USES=xorg and USES=gl 2019-11-07 18:41:56 +00:00
py-eccodes-python Update to 0.9.3 2019-10-20 17:12:09 +00:00
py-geometer Update to 0.2.0 2019-09-25 20:41:50 +00:00
py-gpaw
py-GPy science/py-GPy: Update 1.9.8 -> 1.9.9 2019-10-20 00:41:22 +00:00
py-GPyOpt
py-gsd science/py-gsd: Update 1.8.1 -> 1.9.3 2019-10-12 16:47:23 +00:00
py-h5py
py-hcluster
py-kinematics
py-lifelines
py-MDAnalysis
py-MDAnalysisTests
py-mdp
py-mlpy math/gsl: update to 2.6 2019-10-25 23:41:34 +00:00
py-mmtf-python
py-molmod science/py-molmod: Update 1.4.4 -> 1.4.5 2019-10-12 16:44:38 +00:00
py-netCDF4
py-obspy
py-oddt
py-OpenFermion
py-openpiv
py-paida
py-paramz
py-phono3py devel/openmp: update to 9.0.0 2019-09-21 18:59:57 +00:00
py-phonopy
py-pupynere
py-pyaixi
py-pydicom
py-PyFR devel/openmp: update to 9.0.0 2019-09-21 18:59:57 +00:00
py-pygeodesy
py-pymatgen
py-pymol
py-pyosf
py-PyQuante Unmark these ports broken on aarch64. 2019-11-08 03:54:11 +00:00
py-pysal
py-pyteomics
py-pyteomics.biolccc
py-qcelemental science/py-qcelemental: Update 0.9.0 -> 0.11.0 2019-10-29 03:42:56 +00:00
py-qcengine
py-qspin
py-quantities
py-rmf
py-rmsd
py-ruffus
py-ScientificPython Mark a few ports BROKEN (unfetchable) 2019-11-06 16:26:34 +00:00
py-scikit-fuzzy
py-scikit-learn Release. 2019-11-11 12:00:44 +00:00
py-scikit-sparse
py-scimath
py-scipy
py-scoria
py-SimpleSpectral
py-spglib
py-tensorflow Don't put magic strings where they are not needed. 2019-11-04 17:26:59 +00:00
py-tensorflow-estimator science/py-tensorflow-estimator: Attempt to unbreak 2019-11-09 07:05:53 +00:00
py-veusz science/py-veusz: Update 3.0.1 -> 3.1 2019-10-29 03:36:12 +00:00
py-ws2300
pybrain
pycdf
pynn
qbox science/qbox: Update 1.67.4 -> 1.68.0 2019-09-21 06:35:02 +00:00
qcl
qmcpack devel/openmp: update to 9.0.0 2019-09-21 18:59:57 +00:00
quantum-espresso
quantum-espresso-pseudopotentials
qwalk
R-cran-AMORE
R-cran-bayesm
R-cran-cmprsk - Update to 2.2-9 2019-10-11 09:12:52 +00:00
R-cran-DCluster
R-cran-e1071
R-cran-eco
R-cran-Epi - Update to 2.38 2019-09-26 10:50:23 +00:00
R-cran-epicalc
R-cran-etm
R-cran-fastICA
R-cran-kernlab - Update to 0.9-28 2019-11-10 11:08:16 +00:00
R-cran-snow
R-cran-som
R-cran-udunits2
rdkit
rmf
rubygem-ai4r
rubygem-cdo
rubygem-rgeo
rubygem-rgeo-geojson Cosmetic change 2019-11-03 17:23:27 +00:00
rubygem-rgeo-proj4
rubygem-rgeo-shapefile
rubygem-ruby-dcl Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
rubygem-ruby-netcdf
scidavis math/gsl: update to 2.6 2019-10-25 23:41:34 +00:00
siesta
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo
simbody Sprinkle more USES=xorg 2019-11-07 20:19:59 +00:00
simgrid
simint
simlib
simsmith
smoldyn Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
sparta
spglib
step KDE Applications: update to 19.08.3 2019-11-09 08:13:40 +00:00
svmlight
szip
teem
tfel Mark a few ports BROKEN (unfetchable) 2019-11-06 16:26:34 +00:00
tinker
udunits
v_sim Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
vipster Mark a few ports BROKEN (unfetchable) 2019-11-06 16:26:34 +00:00
vmd Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
voro++
wannier90
wwplot
wxmacmolplt
xcrysden Add USES=xorg USES=gl, ports categories s 2019-11-07 17:17:53 +00:00
xdrawchem
xfce4-equake-plugin science/xfce4-equake-plugin: fix build on GCC architectures 2019-10-02 14:02:33 +00:00
yoda
Makefile New port: science/highfive: Header-only C++ HDF5 interface 2019-11-03 01:27:45 +00:00