freebsd-ports/biology
Philip M. Gollucci 76b1b59c33 - Update download locations, update WWW
Reported by:    -fetch-original pointyhat run
2009-02-01 08:17:14 +00:00
..
adun - add LICENSE: 2009-01-16 16:01:05 +00:00
ariadne
artemis
avida - Update to 2.8.1 2008-10-23 14:13:37 +00:00
babel
belvu
biococoa - add LICENSE: 2009-01-16 16:01:05 +00:00
biojava Reset nemoliu due to maintainer-timeouts and no response to email. 2008-12-08 06:43:50 +00:00
blast - Remove conditional checks relevant only on FreeBSD 5.x and older 2009-01-05 17:27:29 +00:00
blat - Remove USE_GCC where it can be satisfied with base compiler on following 2008-07-25 14:34:52 +00:00
boinc-simap - Remove conditional checks relevant only on FreeBSD 5.x and older 2009-01-05 17:27:29 +00:00
chemeq
clustalw
consed
crimap
distribfold
dna-qc
dotter
embassy
emboss
fasta - Update download location 2009-01-31 22:45:38 +00:00
fasta3
fastdnaml
finchtv
fluctuate
garlic
genpak - Remove duplicates from MAKE_ENV after inclusion of CC and CXX in default MAKE_ENV 2008-07-25 09:08:42 +00:00
gff2ps
gmap Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script. 2008-08-21 06:18:49 +00:00
gperiodic
grappa
hmmer - Update download locations, update WWW 2009-02-01 08:17:14 +00:00
jalview
kinemage
L-Breeder - Update X.org ports to 7.4+ (few ports are more recent than the katamari). 2009-01-23 16:28:36 +00:00
lagan - Remove duplicates from MAKE_ENV after inclusion of CC and CXX in default MAKE_ENV 2008-07-25 09:08:42 +00:00
lamarc - Update to 2.1.3 2008-07-31 16:18:42 +00:00
libgenome Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script. 2008-08-21 06:18:49 +00:00
linux-foldingathome
lsysexp
mafft
mapm3
migrate - Update to 3.0.3 2009-01-14 16:00:34 +00:00
molden - Unbreak distinfo after portrevision bump 2009-01-09 19:31:49 +00:00
mopac Add -lf2c, this is the correct dependency. Bump portrevision. 2008-08-22 22:20:05 +00:00
mrbayes
mummer
muscle
ncbi-toolkit
njplot
ortep3 Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3. 2009-01-07 16:34:27 +00:00
p5-AcePerl - Remove conditional checks relevant only on FreeBSD 5.x and older 2009-01-05 17:27:29 +00:00
p5-Bio-ASN1-EntrezGene
p5-Bio-Das - update to 1.10 2008-12-11 05:19:12 +00:00
p5-Bio-Phylo
p5-bioperl Fix plist with perl 5.8.9. 2009-01-14 15:10:02 +00:00
p5-bioperl-devel - Unbreak 2008-10-21 15:24:46 +00:00
p5-bioperl-run - Unbreak after p5-bioperl changed portrevision 2009-01-15 22:47:02 +00:00
p5-bioperl-run-devel - Mark as broken 2008-12-16 16:13:11 +00:00
paml - Update to 4.2 2008-12-25 19:56:07 +00:00
phd2fasta
phrap
phred
phylip - Update X.org ports to 7.4+ (few ports are more recent than the katamari). 2009-01-23 16:28:36 +00:00
platon Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3. 2009-01-07 16:34:27 +00:00
povchem
primer3
protomol - Update X.org ports to 7.4+ (few ports are more recent than the katamari). 2009-01-23 16:28:36 +00:00
psi88 Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3. 2009-01-07 16:34:27 +00:00
py-biopython - Update to 1.48 2008-10-11 15:26:33 +00:00
pymol - Update X.org ports to 7.4+ (few ports are more recent than the katamari). 2009-01-23 16:28:36 +00:00
rasmol
recombine
ruby-bio
seaview
seqio - respect NOPORTEXAMPLES/NOPORTDOCS and fix plist 2008-07-12 06:28:25 +00:00
sim4
ssaha
t_coffee - Respect PORTDOCS/PORTEXAMPLES 2008-09-09 13:43:15 +00:00
tinker Bump PORTREVISION due to change of USE_FORTRAN=yes to GCC 4.3. 2009-01-07 16:34:27 +00:00
treepuzzle Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script. 2008-08-21 06:18:49 +00:00
treeviewx
tRNAscan-SE
wise
xdrawchem Update CONFIGURE_ARGS for how we pass CONFIGURE_TARGET to configure script. 2008-08-21 06:18:49 +00:00
xmolwt
Makefile - Delete biology/nab port after being marked DEPRECATED for three months 2008-07-24 12:17:12 +00:00