Wen Heping 472faa276e science/py-DendroPy: Update to 4.5.2 ... PR: 263706 Reported by: yuri@ Approved by: maintainer(timeout, >1 month)		2022-06-05 15:43:08 +08:00
..
2d-rewriter
abinit	textproc/libxml2: bump all LIB_DEPENDS consumers	2022-04-10 15:11:41 -04:00
afni	science/afni: update to 22.1.11	2022-06-04 00:05:23 +02:00
agrum	science/agrum: Update 1.0.0 -> 1.1.0	2022-05-16 14:34:53 -07:00
aircraft-datcom
ALPSCore	devel/boost-all: bump all library consumers after boost upgrade	2022-05-22 23:17:16 +03:00
antioch
apbs
ascent
atompaw	science/atompaw: Update 4.1.1.0 -> 4.2.0.0	2022-03-26 20:19:39 -07:00
avogadro2
avogadrolibs
axom
bagel	science/bagel: mark as BROKEN after recent boost upgrade	2022-05-22 23:17:08 +03:00
bddsolve	devel/boost-all: bump all library consumers after boost upgrade	2022-05-22 23:17:16 +03:00
berkeleygw	science/berkeleygw: Update 2.0.0 -> 3.0.1	2022-05-20 22:25:01 -07:00
bodr
buddy
cantera	science/cantera: Unbreak OCTAVE option	2022-05-02 19:34:42 -07:00
cdcl
cdf
cdk	science/cdk: Update 2.3 -> 2.7.1	2022-06-03 09:49:16 -07:00
cdo	science/cdo: Update to 2.0.5	2022-05-13 19:39:17 +08:00
cgnslib	science/cgnslib: upgrade to v4.3.0	2022-04-20 20:17:05 +02:00
cgribex	graphics/jasper: Bump PORTREVISION of dependent ports for shlib change after cdcedd316d	2022-04-17 04:55:37 +08:00
checkmol
chemical-mime-data	textproc/libxml2: bump all LIB_DEPENDS consumers	2022-04-10 15:11:41 -04:00
chemicalfun
chemps2	science/chemps2: Update 1.8.11 -> 1.8.12	2022-03-11 08:59:46 -08:00
chemtool
chemtool-devel
chimes-calculator
chrono	devel/flatbuffers: Update 2.0.5 -> 2.0.6	2022-05-14 14:35:31 -07:00
clhep
clipper
code_saturne	science/code_saturne: upgrade to 7.1.1	2022-04-26 22:46:44 +02:00
colt
conduit	science/conduit: Update 0.8.2 -> 0.8.3	2022-04-15 12:09:58 -07:00
coordgenlibs
cp2k	science/cp2k: Update 7.1.0-20200518 -> 9.1.0	2022-05-23 18:34:18 -07:00
cp2k-data	science/cp2k-data: Update 7.1.0 -> 9.1.0	2022-05-23 18:34:17 -07:00
crf++
csvtk	*/*: Bump PORTREVISION after lang/go 1.18 update	2022-03-30 03:01:44 -04:00
dakota	devel/boost-all: bump all library consumers after boost upgrade	2022-05-22 23:17:16 +03:00
dalton
dcl
devisor
dftbplus	science/dftbplus: Update 21.2 -> 22.1	2022-05-25 23:52:58 -07:00
dftd4	science/dftd4: Update 3.3.0 -> 3.4.0	2022-04-30 12:48:30 -07:00
dkh
dlib-cpp
drawxtl
dvc
dynare	science/dynare: Update 5.0 -> 5.1	2022-04-23 09:45:04 -07:00
eccodes	science/eccodes: Update to 2.26.0	2022-06-03 17:00:25 +08:00
elk	science/elk: Update 8.3.22 -> 8.4.6	2022-04-08 19:30:28 -07:00
elmerfem	science/elmerfem: Fix build with GCC 11	2022-05-06 15:01:10 +02:00
epte
erd
ergo
erkale	science/erkale{,-pseudopotentials}: Update g20200426 -> g20220405	2022-05-24 12:51:17 -07:00
erkale-pseudopotentials	science/erkale{,-pseudopotentials}: Update g20200426 -> g20220405	2022-05-24 12:51:17 -07:00
fastcap
fasthenry
fastjet
fisicalab
fleur	textproc/libxml2: bump all LIB_DEPENDS consumers	2022-04-10 15:11:41 -04:00
frontistr
fsom
fvcom	science/netcdf-fortran: Update to 4.5.4	2022-03-08 02:10:59 +08:00
fvcom-mpi
gabedit
gamess-us
gbtolib	science/gbtolib: New port: High-performance library for evaluation of molecular integrals	2022-05-24 17:02:33 -07:00
gchemutils	textproc/libxml2: bump all LIB_DEPENDS consumers	2022-04-10 15:11:41 -04:00
gdma
getdp	devel/cmake: Update to 3.23.0	2022-05-16 08:49:43 +02:00
ghemical	textproc/libxml2: bump all LIB_DEPENDS consumers	2022-04-10 15:11:41 -04:00
ghmm	textproc/libxml2: bump all LIB_DEPENDS consumers	2022-04-10 15:11:41 -04:00
gnudatalanguage	science/gnudatalanguage: fix pkg-plist use share/man	2022-05-16 08:49:47 +02:00
gpaw-setups
gramps	cleanup: remove wrong usage of INSTALLS_OMF	2022-03-15 11:16:57 +01:00
grib_api	graphics/jasper: Bump PORTREVISION of dependent ports for shlib change after cdcedd316d	2022-04-17 04:55:37 +08:00
gromacs	devel/cmake: Update to 3.23.0	2022-05-16 08:49:43 +02:00
gsmc
gtamsanalyzer
h5utils
h5z-zfp
harminv
hdf
hdf5
hdf5-18
healpix
helfem
hepmc3	science/hepmc3: Update 3.2.4 -> 3.2.5	2022-05-12 11:57:53 -07:00
highfive	science/highfive: Update 2.4.0 -> 2.4.1	2022-05-12 11:57:51 -07:00
hypre
iboview
InsightToolkit
isaac-cfd
jdftx
jmol	science/jmol: Update 14.32.56 -> 14.32.57	2022-05-21 13:38:51 -07:00
jstrack
kalzium	KDE: Update KDE Gear to 22.04.1 (bug fix & translation release)	2022-05-13 14:33:03 +02:00
kim-api	science/kim-api: Update 2.2.1 -> 2.3.0	2022-03-19 18:18:45 -07:00
kst2	science/kst2: Update to 2022.02.16 snapshot	2022-03-11 19:48:57 +03:00
lammps	science/lammps: Update 24Mar2022 -> 2Jun2022	2022-06-03 11:36:00 -07:00
lamprop
latte
libaec
libccp4
libcint	science/libcint: Update 5.1.0 -> 5.1.2	2022-05-05 09:11:23 -07:00
libctl
libecpint
libefp
libgeodecomp	science/libgeodecomp: mark as BROKEN after recent boost upgrade	2022-05-22 23:17:12 +03:00
libghemical
libgridxc
libint
libint2	devel/boost-all: bump all library consumers after boost upgrade	2022-05-22 23:17:16 +03:00
libkml	devel/boost-all: bump all library consumers after boost upgrade	2022-05-22 23:17:16 +03:00
liblinear	science/liblinear: Update to 2.44	2022-03-31 06:03:39 +08:00
libmbd
libmsym
libnegf	science/libnegf: Update 1.0.3 -> 1.1.2	2022-05-18 13:51:37 -07:00
liboglappth
libquantum
libssm
libsvm
libsvm-python
libvdwxc
libxc	science/libxc: Update 5.1.7 -> 5.2.3	2022-05-24 10:30:13 -07:00
liggghts
linux-zotero
luscus
madness
maeparser	devel/boost-all: bump all library consumers after boost upgrade	2022-05-22 23:17:16 +03:00
massxpert	science/massxpert: Improve port	2022-05-19 21:38:15 +02:00
mbdyn
mcstas
mcstas-comps
mctc-lib	science/mctc-lib: Update 0.2.5 -> 0.3.0	2022-04-19 20:40:01 -07:00
mcxtrace	*/*: fix trailing whitespace in pkg-descr's	2022-04-01 18:09:49 +03:00
mcxtrace-comps
mdynamix	*/*: fix trailing whitespace in pkg-descr's	2022-04-01 18:09:49 +03:00
medit
metaphysicl
minc2
mmdb2	science/mmdb2: Update 2.0.20 -> 2.0.22	2022-04-30 09:03:26 -07:00
mmtf-cpp
mol2ps
molgif	*/*: Bump PORTREVISION after lang/go 1.18 update	2022-03-30 03:01:44 -04:00
molscript
molsketch
mpb
mpqc
msms
mstore
multicharge	science/multicharge: Update 0.1.2 -> 0.2.0	2022-05-05 23:21:10 -07:00
multiwfn
namd
nest	science/nest: remove redundant USES=compiler	2022-05-31 03:06:02 +00:00
netcdf	science/netcdf: Fix PLIST after Doxygen 1.9.4 update (e686f2196c)	2022-05-13 19:39:18 +08:00
netcdf-cxx	science/netcdf-cxx: Update MASTER_SITES	2022-03-08 02:10:59 +08:00
netcdf-fortran	science/netcdf-fortran: Update to 4.5.4	2022-03-08 02:10:59 +08:00
nifticlib
nwchem
nwchem-data
octopus	science/octopus: Cosmetic changes	2022-05-31 02:12:09 -07:00
openbabel	devel/boost-all: bump all library consumers after boost upgrade	2022-05-22 23:17:16 +03:00
openems	devel/boost-all: bump all library consumers after boost upgrade	2022-05-22 23:17:16 +03:00
openkim
openkim-models	science/openkim-models: Update 2021-01-28 -> 2021-08-11	2022-05-08 11:02:07 -07:00
openmc	devel/cmake: Update to 3.23.0	2022-05-16 08:49:43 +02:00
openmolcas	science/openmolcas: Broken on i386	2022-05-28 22:52:44 -07:00
openmx
opensim-core
opensph	science/opensph: Only for amd64 i386	2022-03-29 14:02:08 -07:00
opsin
orthanc	science/orthanc: Update to 1.11.0	2022-05-30 16:53:38 +02:00
orthanc-dicomweb	devel/boost-all: bump all library consumers after boost upgrade	2022-05-22 23:17:16 +03:00
orthanc-mysql	devel/boost-all: bump all library consumers after boost upgrade	2022-05-22 23:17:16 +03:00
orthanc-postgresql	devel/boost-all: bump all library consumers after boost upgrade	2022-05-22 23:17:16 +03:00
orthanc-webviewer	devel/boost-all: bump all library consumers after boost upgrade	2022-05-22 23:17:16 +03:00
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-WebService-Elevation-USGS
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit
packmol
pagmo2	devel/boost-all: bump all library consumers after boost upgrade	2022-05-22 23:17:16 +03:00
paje
paraview	science/paraview: upgrade to v5.10.1	2022-05-26 22:04:49 +02:00
pastix	science/pastix: adding PaStiX, a sparse direct solver	2022-04-23 18:41:10 +02:00
pcmsolver	science/pcmsolver: Small fixes	2022-05-20 21:35:33 -07:00
PETSc
phonopy	science/phonopy: Update 2.15.0 -> 2.15.1	2022-05-28 21:52:24 -07:00
plumed	science/plumed: Use upsteam release archive	2022-05-23 13:39:54 +02:00
pnetcdf
pulseview	devel/boost-all: bump all library consumers after boost upgrade	2022-05-22 23:17:16 +03:00
py-abipy
py-access	science/py-access: Update to 1.1.7	2022-06-03 17:00:41 +08:00
py-asdf	science/py-asdf: Update to 2.11.1	2022-04-26 23:01:29 +08:00
py-asdf-standard	science/py-asdf-standard: Update to 1.0.2	2022-04-18 07:58:22 +08:00
py-asdf-transform-schemas	science/py-asdf-standard: Update to 1.0.2	2022-04-18 07:58:22 +08:00
py-ase
py-avogadrolibs
py-cdo
py-chainer	devel/protobuf: Update to 3.20.0	2022-04-16 12:19:07 +08:00
py-chainer-chemistry
py-chempy	science/py-chempy: switch to USES=pytest, fix tests and document failing ones	2022-04-26 20:26:11 +03:00
py-cirq-aqt	science/py-cirq-aqt: Update 0.12.0 -> 0.14.1	2022-04-21 13:40:10 -07:00
py-cirq-core	science/py-cirq-core: Update 0.13.1 -> 0.14.1	2022-04-21 13:40:10 -07:00
py-cirq-google	science/py-cirq-google: Update 0.14.0 -> 0.14.1	2022-05-07 10:11:29 -07:00
py-cirq-ionq	science/py-cirq-ionq: Update 0.13.1 -> 0.14.1	2022-04-21 13:40:10 -07:00
py-cirq-pasqal	science/py-cirq-pasqal: Update 0.13.1 -> 0.14.1	2022-04-21 13:40:10 -07:00
py-coards
py-DendroPy	science/py-DendroPy: Update to 4.5.2	2022-06-05 15:43:08 +08:00
py-dipy	science/py-dipy: Update 1.4.1 -> 1.5.0	2022-04-24 12:42:21 -07:00
py-dlib
py-eccodes	science/py-eccodes: Update to 1.4.2	2022-05-22 12:37:30 +08:00
py-esda
py-fresnel
py-geolinks
py-geomet
py-geometer	science/py-geometer: Update to 0.3.4	2022-04-26 23:01:29 +08:00
py-geometric
py-gpaw
py-GPy
py-GPyOpt
py-gsd	science/py-gsd: Update 2.5.1 -> 2.5.2	2022-04-19 18:08:13 -07:00
py-h5json
py-h5py	science/py-h5py: Convert to USE_PYTHON=pytest	2022-06-04 00:57:26 +08:00
py-hiphive	science/py-hiphive: Update 1.0 -> 1.1	2022-05-07 10:11:29 -07:00
py-hoomd-blue	science/py-hoomd-blue: Update 3.1.0 -> 3.2.0	2022-05-19 19:10:19 -07:00
py-inequality
py-jupyter_jsmol	science/py-jupyter_jsmol: switch to USES=pytest, fix testing	2022-04-26 16:45:58 +03:00
py-kim-query	science/py-kim-query: Update 1.1.0 -> 3.0.0	2022-05-08 11:02:07 -07:00
py-kinematics
py-kliff	science/py-kliff: Update 0.3.3 -> 0.4.0	2022-04-29 12:40:02 -07:00
py-liac-arff
py-libpysal	science/py-libpysal: Update to 4.6.2	2022-03-25 21:37:13 +08:00
py-lifelines
py-MDAnalysis
py-MDAnalysisTests
py-mdp	science/py-mdp: Fix build with setuptools 58.0.0+	2022-03-25 21:38:19 +08:00
py-mmtf-python
py-molmod
py-moltemplate	science/py-moltemplate: Update 2.20.3 -> 2.20.5	2022-05-09 23:37:51 -07:00
py-netCDF4
py-netcdf-flattener
py-nibabel	science/py-nibabel: Update 3.2.1 -> 3.2.2	2022-04-24 12:42:19 -07:00
py-nilearn	science/py-nilearn: mark BROKEN	2022-03-23 14:44:26 +03:00
py-obspy	science/py-obspy: Update to 1.3.0	2022-03-14 12:14:38 +08:00
py-oddt	science/py-oddt: Not install tests	2022-03-25 10:28:34 -07:00
py-OpenFermion
py-OpenMC	science/{,py-}openmc: Update 0.12.2 -> 0.13.0	2022-05-08 13:55:59 -07:00
py-openpiv
py-paida	science/py-paida: Fix build with setuptools 58.0.0+	2022-03-25 21:38:19 +08:00
py-paramz
py-phono3py
py-phonopy	science/py-phonopy: Update 2.13.1 -> 2.14.0	2022-04-10 16:21:50 -07:00
py-PubChemPy
py-pupynere
py-pyaixi
py-pyberny
py-pycsw
py-pydicom	science/py-pydicom: Update to 2.3.0	2022-04-07 11:41:06 +00:00
py-PyFR	science/py-PyFR: Update 1.13.0 -> 1.14.0	2022-05-05 23:21:10 -07:00
py-pygeodesy
py-pygeometa	science/py-pygeometa: Update to 0.10.0	2022-06-03 17:00:41 +08:00
py-pygmo2	devel/boost-all: bump all library consumers after boost upgrade	2022-05-22 23:17:16 +03:00
py-pyked	devel/py-pint: Update to 0.19.1	2022-04-18 07:58:18 +08:00
py-pymatgen	science/py-pymatgen: Update 2022.0.17 -> 2022.4.26	2022-05-09 20:50:24 -07:00
py-pymol	textproc/libxml2: bump all LIB_DEPENDS consumers	2022-04-10 15:11:41 -04:00
py-PyNE	science/py-PyNE: Fix build with setuptools 58.0.0+	2022-06-03 21:59:10 +08:00
py-pyosf
py-pysal	science/py-pysal: Update to 2.6.0	2022-03-08 02:11:26 +08:00
py-pyscf
py-pyteomics	science/py-pyteomics: Update to 4.5.3	2022-03-25 21:37:13 +08:00
py-qcelemental	devel/py-pint: Update to 0.19.1	2022-04-18 07:58:18 +08:00
py-qcengine	devel/py-pint: Update to 0.19.1	2022-04-18 07:58:18 +08:00
py-qspin	science/py-qspin: Fix build with setuptools 58.0.0+	2022-03-25 21:38:19 +08:00
py-quantities
py-rmf	science/{,py-}rmf: Update 1.3.1 -> 1.4	2022-03-11 08:59:47 -08:00
py-rmsd
py-ruffus
py-scikit-fuzzy
py-scikit-learn	science/py-scikit-learn: Update to 1.1.0	2022-05-17 18:03:54 +08:00
py-scikit-optimize
py-scikit-sparse
py-scimath
py-scipy	science/py-scipy: Update to 1.8.1	2022-05-25 15:46:45 +08:00
py-scoria
py-segregation	science/py-segregation: Update to 2.2.3	2022-04-18 07:58:23 +08:00
py-segyio	science/py-segyio: switch to USES=pytest and fix tests	2022-04-26 16:46:03 +03:00
py-SimpleSpectral
py-sklearn-pandas
py-skrebate
py-spaghetti
py-spglib	science/{,py-}spglib: Update 1.16.3 -> 1.16.5	2022-05-07 22:27:10 -07:00
py-tensorflow	devel/icu: update to 71.1	2022-04-07 00:39:10 +00:00
py-thewalrus	science/py-thewalrus: New port: Open source library for hafnian calculation	2022-05-31 20:42:38 -07:00
py-tobler	science/py-tobler: Update to 0.9.0	2022-03-08 02:11:26 +08:00
py-trainstation	science/py-trainstation: New port: Convenient training of linear models	2022-03-07 12:14:14 -08:00
py-veusz
pybrain
pynn
q	science/q: New port: Molecular Dynamics (MD) tools	2022-05-23 18:54:08 -07:00
qbox	science/qbox: Update 1.74.1 -> 1.74.2	2022-03-26 19:40:09 -07:00
qcl
qiskit-aer
qmcpack	devel/boost-all: bump all library consumers after boost upgrade	2022-05-22 23:17:16 +03:00
quantum-espresso
quantum-espresso-pseudopotentials
quantum-jet	science/quantum-jet: New port: Cross-platform header-only library for simulating quantum circuits	2022-05-31 13:02:18 -07:00
qwalk	textproc/libxml2: bump all LIB_DEPENDS consumers	2022-04-10 15:11:41 -04:00
R-cran-AMORE
R-cran-bayesm
R-cran-cmprsk
R-cran-DCluster
R-cran-e1071
R-cran-eco
R-cran-Epi	science/R-cran-Epi: Update to 2.46	2022-04-17 06:22:10 +00:00
R-cran-epicalc
R-cran-etm
R-cran-FAdist
R-cran-fastICA
R-cran-kernlab	science/R-cran-kernlab: Update to 0.9-30	2022-04-05 16:01:14 +00:00
R-cran-ks	science/R-cran-ks: adding a R library for Kernel Smoothing	2022-05-06 17:32:19 +02:00
R-cran-snow
R-cran-som
R-cran-udunits2	science/R-cran-udunits2: Update to 0.13.2.1	2022-03-15 23:22:57 +00:00
rdkit	science/rdkit: Update 2022.03.2 -> 2022.03.3	2022-06-03 00:17:04 -07:00
rmf	devel/boost-all: bump all library consumers after boost upgrade	2022-05-22 23:17:16 +03:00
rubygem-ai4r
rubygem-cdo
rubygem-rgeo
rubygem-rgeo-geojson
rubygem-rgeo-proj4
rubygem-rgeo-shapefile
rubygem-ruby-dcl
rubygem-ruby-netcdf	science/rubygem-ruby-netcdf: Update to 0.8.0	2022-03-31 06:21:46 +08:00
scidavis	science/scidavis: tell portscout to ignore old tag	2022-05-10 21:31:45 +03:00
segyio	devel/cmake: Update to 3.23.0	2022-05-16 08:49:43 +02:00
shelxle	science/shelxle: Update 1.0.1385 -> 1.0.1387	2022-05-30 12:32:25 -07:00
siconos
siesta
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo
simbody
simgrid	devel/boost-all: bump all library consumers after boost upgrade	2022-05-22 23:17:16 +03:00
simint
simlib
simple-dftd3	science/simple-dftd3: Update 0.5.1 -> 0.6.0	2022-04-30 12:48:30 -07:00
simsmith
smoldyn
sparta
spglib	science/spglib: fix build without libomp	2022-05-31 03:05:56 +00:00
step	KDE: Update KDE Gear to 22.04.1 (bug fix & translation release)	2022-05-13 14:33:03 +02:00
svmlight
szip
tblite	science/tblite: Update 0.2.0 -> 0.2.1	2022-05-21 20:48:48 -07:00
teem
tfel	devel/boost-all: bump all library consumers after boost upgrade	2022-05-22 23:17:16 +03:00
tfel-edf	devel/boost-all: bump all library consumers after boost upgrade	2022-05-22 23:17:16 +03:00
thermofun
tinker	science/tinker: don't set -march=native	2022-05-22 00:10:44 +00:00
udunits
ukrmol+	science/ukrmol+: Broken on aarch64	2022-06-03 11:23:35 -07:00
v_sim
vipster
vmd
voro++
votca	devel/boost-all: bump all library consumers after boost upgrade	2022-05-22 23:17:16 +03:00
wannier90
wwplot
wxmacmolplt
xcfun
xcrysden
xdrawchem
xtb
yoda
zotero	devel/libffi: Bump deps PORTREVISION for shlib change	2022-05-09 12:23:51 -07:00
Makefile	science/py-thewalrus: New port: Open source library for hafnian calculation	2022-05-31 20:42:38 -07:00