9ca211c1ff
read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access to the command line functionality of the samtools and bcftools packages. The module supports compression and random access through indexing. This module provides a low-level wrapper around the htslib C-API as using cython and a high-level API for convenient access to the data within standard genomic file formats. WWW: https://pypi.python.org/pypi/pysam PR: 218745 Submitted by: Yuri Victorovich <yuri@rawbw.com>
11 lines
514 B
Plaintext
11 lines
514 B
Plaintext
pysam is a lightweight wrapper of the htslib C-API and provides facilities to
|
|
read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access
|
|
to the command line functionality of the samtools and bcftools packages. The
|
|
module supports compression and random access through indexing.
|
|
|
|
This module provides a low-level wrapper around the htslib C-API as using
|
|
cython and a high-level API for convenient access to the data within standard
|
|
genomic file formats.
|
|
|
|
WWW: https://pypi.python.org/pypi/pysam
|