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freebsd-ports/science
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David Chisnall 3f627ab4ce Move Objective-C ports to the v2 GNUstep ABI. 
* Bump the LLVM revision used for GNUstep to 7, the minimum to support
   the new ABI.
 * GNUstep-back does not work with lld, so mark it to use Gold (BFD LD
   doesn't seem able to link Objective-C things).
 * Turn off some annoying debug logs in GNUstep back, which generate
   several messages per second when you move the mouse.  These should
   never have been enabled in a release build anyway.
 * Downgrade Cenon to 4.0.2.  This was the last version to actually work
   with GNUstep (the later ones use XCode >= 5 .xib files, which GNUstep
   can't parse).
 * Update gorm to git head. The current release doesn't work with the
   new Objective-C ABI, but -head has the patches to fix it.
 * Update PikoPixel and add it to the gnustep-app meta-package.
 * Update the three core GNUstep packages to the latest release.
 * Update gnumail and pantomime to the latest release and fix a linking
   error with the new ABI.
 * Update GNUstep FTP to the latest version.

Reviewed by:	bapt (previous version)
2019-02-03 15:37:58 +00:00
..
2d-rewriter
abinit
afni
agrum science/agrum: Update 0.13.4 -> 0.13.6 2019-01-22 03:06:25 +00:00
aircraft-datcom
ALPSCore science/ALPSCore: Mark broken on i386 2019-02-02 17:53:04 +00:00
antioch
atom
atompaw
avogadro
avogadro2 Fix Qt5 symbol version scripts to put the catch-all clause first. When 2019-01-16 11:13:44 +00:00
avogadrolibs Fix Qt5 symbol version scripts to put the catch-all clause first. When 2019-01-16 11:13:44 +00:00
bagel science/bagel: Update 1.2.1 -> 1.2.2 2019-01-15 18:27:47 +00:00
bddsolve
berkeleygw
bodr
brian
buddy
cdcl
cdf
cdo Update science/hdf5 to 1.10.4 2019-01-05 22:46:53 +00:00
cgnslib Update science/hdf5 to 1.10.4 2019-01-05 22:46:53 +00:00
cgribex
checkmol - Add LLD_UNSAFE 2019-01-15 05:43:59 +00:00
chemical-mime-data
chemps2 Update science/hdf5 to 1.10.4 2019-01-05 22:46:53 +00:00
chemtool
chemtool-devel
chrono Update science/hdf5 to 1.10.4 2019-01-05 22:46:53 +00:00
clhep science/clhep: Update version 2.4.0.4=>2.4.1.0 2019-01-01 21:53:48 +00:00
clipper
code_saturne Fix Qt5 symbol version scripts to put the catch-all clause first. When 2019-01-16 11:13:44 +00:00
colt
coordgenlibs
coot science/coot: Remove the unused CONFIGURE_ARGS line 2019-01-17 05:59:38 +00:00
cp2k science/cp2k: Remove contiguous blank lines 2019-01-26 05:23:51 +00:00
crf++
dalton
datawarrior science/datawarrior: Update 4.7.2 -> 5.0.0 2019-01-26 08:01:20 +00:00
dcl
devisor
dft_tools Update science/hdf5 to 1.10.4 2019-01-05 22:46:53 +00:00
dftbplus - science/dftbplus is not compatible with python3 2019-01-05 15:14:26 +00:00
dkh
dlib-cpp
dlpoly-classic
drawxtl
eccodes Update to 2.10.0 2019-01-01 20:32:25 +00:00
elk
epte
erd
erkale science/erkale: Update 0c285c1 -> 4bd3930 2019-01-18 16:25:43 +00:00
erkale-pseudopotentials New port: science/erkale-pseudopotentials: Pseudopotentials for Erkale, the quantum chemistry program 2019-01-17 09:42:53 +00:00
esys-particle
fastcap
fasthenry
fisicalab Move Objective-C ports to the v2 GNUstep ABI. 2019-02-03 15:37:58 +00:00
fleur Update science/hdf5 to 1.10.4 2019-01-05 22:46:53 +00:00
fsom
fvcom
fvcom-mpi
gabedit
gamess-us
gchemutils
gdma
getdp
ghemical
ghmm
gnudatalanguage Update science/hdf5 to 1.10.4 2019-01-05 22:46:53 +00:00
gpaw-setups
gramps
grib_api Update to 1.28.0 2019-01-01 20:32:31 +00:00
gromacs science/gromacs: Update 2018.4 -> 2019 2019-01-22 02:02:15 +00:00
gsmc
gtamsanalyzer Move Objective-C ports to the v2 GNUstep ABI. 2019-02-03 15:37:58 +00:00
gwyddion
h5utils Update science/hdf5 to 1.10.4 2019-01-05 22:46:53 +00:00
h5z-zfp Update science/hdf5 to 1.10.4 2019-01-05 22:46:53 +00:00
harminv
hdf
hdf5 Update science/hdf5 to 1.10.4 2019-01-05 22:46:53 +00:00
hdf5-18
healpix New port: science/healpix: Software for pixelization, visualization, etc of data on the sphere 2019-01-28 09:33:12 +00:00
hypre
iboview Fix Qt5 symbol version scripts to put the catch-all clause first. When 2019-01-16 11:13:44 +00:00
InsightToolkit Update science/hdf5 to 1.10.4 2019-01-05 22:46:53 +00:00
isaac-cfd
jdftx Update science/hdf5 to 1.10.4 2019-01-05 22:46:53 +00:00
jstrack
kalzium Fix Qt5 symbol version scripts to put the catch-all clause first. When 2019-01-16 11:13:44 +00:00
kst2 Fix Qt5 symbol version scripts to put the catch-all clause first. When 2019-01-16 11:13:44 +00:00
lammps
lamprop
latte
libaec
libccp4
libcint
libctl
libefp
libgeodecomp
libghemical
libgridxc
libint
libint2
libkml
liblinear
libmsym
liboglappth
libquantum
libssm
libsvm
libsvm-python
libxc
liggghts Fix Qt5 symbol version scripts to put the catch-all clause first. When 2019-01-16 11:13:44 +00:00
lm science/lm: Do not set VMD_VARS twice 2019-01-17 06:24:51 +00:00
luscus
madness
maeparser
massxpert
mbdyn
mcstas Cleanup RLN usage 2019-01-14 14:05:39 +00:00
mcstas-comps science/mcstas-comps: fix RUN_DEPENDS 2019-01-19 09:48:16 +00:00
mcxtrace
mcxtrace-comps
mdynamix
medit
meep Update science/hdf5 to 1.10.4 2019-01-05 22:46:53 +00:00
metaf2xml
metaphysicl
minc2 Update science/hdf5 to 1.10.4 2019-01-05 22:46:53 +00:00
mmdb2
mmtf
mol2ps - Add LLD_UNSAFE 2019-01-15 05:44:58 +00:00
molgif
molsketch Fix Qt5 symbol version scripts to put the catch-all clause first. When 2019-01-16 11:13:44 +00:00
MOOSE-neural-simulator Update science/hdf5 to 1.10.4 2019-01-05 22:46:53 +00:00
mpb Update science/hdf5 to 1.10.4 2019-01-05 22:46:53 +00:00
mpqc
msms
multiwfn
namd
netcdf Update to 4.6.2 2019-01-13 20:08:05 +00:00
netcdf-cxx Change MASTER_SITES 2019-01-13 20:08:10 +00:00
netcdf-fortran Update to 4.4.5 2019-01-13 20:08:15 +00:00
nifticlib
nwchem New port: science/nwchem-data: Data for NWChem, the computational chemistry software 2019-01-26 22:00:10 +00:00
nwchem-data New port: science/nwchem-data: Data for NWChem, the computational chemistry software 2019-01-26 22:00:10 +00:00
octopus science/octopus: patches 2019-01-20 01:22:46 +00:00
openbabel
openkim
openmx
opensim-core
openstructure
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS
p5-Mcstas-Tools
p5-PerlMol science/p5-PerlMol: Do not set BUILD_DEPENDS twice 2019-01-08 16:00:58 +00:00
p5-Physics-Unit
paje Move Objective-C ports to the v2 GNUstep ABI. 2019-02-03 15:37:58 +00:00
paraview Fix Qt5 symbol version scripts to put the catch-all clause first. When 2019-01-16 11:13:44 +00:00
pcmsolver science/pcmsolver: Update 1.2.1 -> 1.2.2 2019-01-31 04:57:30 +00:00
PETSc
pnetcdf
psychopy
pulseview Fix Qt5 symbol version scripts to put the catch-all clause first. When 2019-01-16 11:13:44 +00:00
py-abipy
py-asdf Add py-asdf 2.3.1 2019-01-17 19:21:25 +00:00
py-ase
py-avogadrolibs Fix Qt5 symbol version scripts to put the catch-all clause first. When 2019-01-16 11:13:44 +00:00
py-cdo
py-chempy
py-coards
py-DendroPy
py-dlib
py-gpaw science/py-gpaw: Update 1.5.0 -> 1.5.1 2019-01-26 05:31:44 +00:00
py-GPy
py-GPyOpt
py-gsd
py-h5py Update science/hdf5 to 1.10.4 2019-01-05 22:46:53 +00:00
py-hcluster
py-kinematics
py-lifelines science/py-lifelines: update to 0.17.0 2019-01-13 18:19:07 +00:00
py-MDAnalysis
py-MDAnalysisTests
py-mdp
py-mlpy
py-mmtf-python
py-molmod
py-netCDF4 Update science/hdf5 to 1.10.4 2019-01-05 22:46:53 +00:00
py-obspy
py-OpenFermion science/py-OpenFermion: Update 0.8 -> 0.9.0 2019-01-17 06:31:46 +00:00
py-openpiv science/py-openpiv: Update to 0.21.0 2019-01-07 10:36:38 +00:00
py-paida
py-paramz
py-phono3py
py-phonopy
py-pupynere
py-pyaixi
py-pydicom
py-PyFR
py-pygeodesy
py-pymatgen science/py-pymatgen: Update 2018.9.30 -> 2018.10.18 2019-01-26 06:27:42 +00:00
py-pymol Fix Qt5 symbol version scripts to put the catch-all clause first. When 2019-01-16 11:13:44 +00:00
py-pyosf
py-PyQuante
py-pysal
py-pyteomics
py-pyteomics.biolccc
py-qspin
py-quantities
py-rmf This port requires USES=compiler:c++11-lang to build on GCC-based 2019-01-12 23:32:09 +00:00
py-rmsd science/py-rmsd: Fix CATEGORIES 2019-01-18 02:07:03 +00:00
py-ScientificPython
py-scikit-fuzzy
py-scikit-learn
py-scikit-sparse
py-scimath
py-scipy - Update to 1.2.0 2019-01-01 08:56:25 +00:00
py-scoria
py-SimpleSpectral
py-spglib science/py-spglib: Update 1.11.1 -> 1.12.0 2019-01-31 04:47:08 +00:00
py-veusz
py-ws2300
pybrain
pycdf
pynn - Update to 0.9.3 2019-01-14 03:26:29 +00:00
qbox
qcl
qmcpack Update science/hdf5 to 1.10.4 2019-01-05 22:46:53 +00:00
qtresistors
quantum-espresso
quantum-espresso-pseudopotentials
qwalk
R-cran-AMORE
R-cran-bayesm
R-cran-cmprsk
R-cran-DCluster
R-cran-e1071
R-cran-eco
R-cran-Epi
R-cran-epicalc
R-cran-etm
R-cran-fastICA
R-cran-kernlab
R-cran-snow
R-cran-som
R-cran-udunits2
rdkit
rmf Update science/hdf5 to 1.10.4 2019-01-05 22:46:53 +00:00
rubygem-ai4r
rubygem-cdo
rubygem-rgeo
rubygem-rgeo-geojson
rubygem-rgeo-proj4
rubygem-rgeo-shapefile Fix gemspec for rubygem-dbf 4.0.0 update 2019-01-06 20:41:11 +00:00
rubygem-ruby-dcl Conditionalize the dependence of libunwind to x86-only to allow building 2019-01-24 05:09:48 +00:00
rubygem-ruby-netcdf
scidavis Fix Qt5 symbol version scripts to put the catch-all clause first. When 2019-01-16 11:13:44 +00:00
siesta
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo Update science/hdf5 to 1.10.4 2019-01-05 22:46:53 +00:00
simbody
simint
simlib
simsmith
sparta
spglib science/spglib: Update 1.11.2 -> 1.11.2.1 2019-01-21 09:26:33 +00:00
step Fix Qt5 symbol version scripts to put the catch-all clause first. When 2019-01-16 11:13:44 +00:00
svmlight
szip Remove outdated document 2019-01-13 20:25:41 +00:00
teem
tfel
tinker science/tinker: Update 8.4.4 -> 8.5.3 2019-01-16 04:36:12 +00:00
triqs Update science/hdf5 to 1.10.4 2019-01-05 22:46:53 +00:00
udunits
v_sim
vipster science/vipster: Update 1.14a -> 1.14.1a 2019-01-16 18:22:23 +00:00
vmd
voro++
wannier90
wxmacmolplt
xcrysden
xdrawchem Fix Qt5 symbol version scripts to put the catch-all clause first. When 2019-01-16 11:13:44 +00:00
xfce4-equake-plugin Clenup xfce ports: 2019-01-22 14:44:38 +00:00
xmakemol
yoda
Makefile New port: science/healpix: Software for pixelization, visualization, etc of data on the sphere 2019-01-28 09:33:12 +00:00