freebsd-ports/biology
2017-06-16 14:49:19 +00:00
..
ariadne
artemis
avida Mark some ports failing on power64. In cases where the error message 2017-05-13 03:35:51 +00:00
babel
bcftools
bedtools Mark some ports failing on armv6, for errors classified as "clang". 2017-05-27 15:07:11 +00:00
biococoa
biojava
blat - Update WWW 2017-06-10 09:01:19 +00:00
bowtie
bowtie2
bwa Mark some ports failing on armv6, for errors classified as "???". 2017-05-26 20:02:44 +00:00
cd-hit
cdbfasta
chemeq
clustalw
consed
crux Mark some ports failing on armv6, for errors classified as "???". 2017-05-26 20:02:44 +00:00
diamond biology/diamond: Update to version 0.9.8 2017-06-16 14:49:19 +00:00
emboss
fasta
fasta3
fastdnaml
fastool
fasttree
fastx-toolkit
fluctuate
garlic
gff2ps
gmap Mark some ports failing on power64. In cases where the error message 2017-05-13 03:35:51 +00:00
gperiodic
grappa
hmmer
htslib
iolib Mark some ports failing on power64. In cases where the error message 2017-05-13 03:35:51 +00:00
jalview
jellyfish
lagan
lamarc
libgtextutils
libsbml - Update to 5.15.0 2017-05-18 02:22:18 +00:00
linux-foldingathome
mafft
mapm3
migrate
molden Previous commit unbroke the port. 2017-06-03 12:48:35 +00:00
mopac
mrbayes
mummer
muscle
ncbi-blast+
ncbi-toolkit
njplot
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Coordinate
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics Remove outdated PERL_LEVEL check 2017-06-01 23:50:28 +00:00
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-BioPerl Remove outdated PERL_LEVEL check 2017-06-01 23:50:33 +00:00
p5-BioPerl-Run
p5-transdecoder
paml
phrap
phred
phylip
phyml Update WWW 2017-05-30 15:22:06 +00:00
plink
plinkseq Mark some ports failing on power64. In cases where the error message 2017-05-13 03:35:51 +00:00
primer3
protomol Revision bump of all ports with USE_GL after consolidation of mesa-libs 2017-05-23 05:03:14 +00:00
psi88
py-biom-format
py-biopython
py-bx-python bx-python is a python library and associated set of scripts to allow for rapid 2017-05-06 06:07:03 +00:00
py-pysam - Update to 0.11.2.2 2017-06-10 02:03:39 +00:00
pycogent
pyfasta
python-nexus
recombine
ruby-bio - Update to 1.5.1 2017-05-07 15:44:34 +00:00
rubygem-bio
samtools
seaview
seqan
seqan1
seqan-apps It is possible that r441426 will fix the build problem on armv6. Give 2017-05-21 23:37:34 +00:00
seqio
seqtools Mark some ports failing on power64. In cases where the error message 2017-05-21 21:55:08 +00:00
sim4
slclust
ssaha
t_coffee
tinker
treepuzzle
trimmomatic
tRNAscan-SE
ugene Revision bump of all ports with USE_GL after consolidation of mesa-libs 2017-05-23 05:03:14 +00:00
vcftools
velvet
wise
xmolwt
Makefile bx-python is a python library and associated set of scripts to allow for rapid 2017-05-06 06:07:03 +00:00