freebsd-ports/biology
2009-11-18 05:53:17 +00:00
..
adun - fix PORTSCOUT 2009-07-06 07:29:12 +00:00
ariadne
artemis
avida - Switch SourceForge ports to the new File Release System: categories starting with B,C 2009-08-22 00:15:15 +00:00
babel
belvu
biococoa
biojava
blast
blat
boinc-simap - Annotate that 8.x no longer needs libmap hack 2009-10-01 07:34:28 +00:00
chemeq
clustalw
consed
crimap
crux Update to Crux 1.2.0. 2009-09-19 17:58:13 +00:00
distribfold
dna-qc
dotter UNBREAK: Probably was a temporary failure, checksums are ok now. 2009-09-16 15:57:18 +00:00
embassy - Update MASTER_SITES 2009-08-14 08:33:22 +00:00
emboss - Update MASTER_SITES 2009-08-14 08:33:22 +00:00
fasta - Update to 21.1.1 2009-11-18 05:33:10 +00:00
fasta3 Update to 35.4.9 2009-08-23 15:47:37 +00:00
fastdnaml
finchtv
fluctuate
garlic
genpak - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
gff2ps
gmap
gperiodic - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
grappa
hmmer
iolib Io_lib is a library of file reading and writing code to provide a 2009-08-28 23:34:20 +00:00
jalview
kinemage
L-Breeder - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
lagan
lamarc
libgenome -Repocopy devel/libtool15 -> libtool22 and libltdl15 -> libltdl22. 2009-08-02 19:36:34 +00:00
libsbml - Update to 4.0.0 2009-09-23 01:06:29 +00:00
linux-foldingathome
lsysexp - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
mafft
mapm3
migrate
molden Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now 2009-09-13 00:08:01 +00:00
mopac - Switch SourceForge ports to the new File Release System: categories starting with B,C 2009-08-22 00:15:15 +00:00
mrbayes
mummer - Update to 3.21. 2009-08-28 14:52:05 +00:00
muscle
ncbi-toolkit
njplot
ortep3 Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now 2009-09-13 00:08:01 +00:00
p5-AcePerl - Flip MAKE_JOBS_SAFE to MAKE_JOBS_UNSAFE 2009-07-07 22:11:07 +00:00
p5-Bio-ASN1-EntrezGene
p5-Bio-Das - Update to 1.14 2009-09-08 12:08:12 +00:00
p5-Bio-Glite
p5-Bio-Graphics - Update to 0.982 2009-08-28 23:36:45 +00:00
p5-Bio-MAGETAB Utilize %%SITE_PERL%% and %%PERL_ARCH%% in pkg-plists 2009-07-30 23:04:49 +00:00
p5-Bio-NEXUS Bio::NEXUS package provides an object-oriented, Perl-based 2009-08-22 20:39:51 +00:00
p5-Bio-Phylo - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
p5-Bio-SCF Bio::SCF module allows you to read and update (in a restricted 2009-08-28 23:36:09 +00:00
p5-bioperl - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
p5-bioperl-run - Relax check on bioperl version; people keep forgetting to update this check 2009-08-02 20:00:08 +00:00
paml - Update to 4.3 2009-08-13 17:00:04 +00:00
phd2fasta
phrap
phred
phylip -Update to 3.69 2009-09-16 14:27:00 +00:00
phyml PhyML is a software that estimates maximum likelihood phylogenies from 2009-07-21 01:10:13 +00:00
platon Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now 2009-09-13 00:08:01 +00:00
povchem
primer3
protomol - Switch SourceForge ports to the new File Release System: categories starting with B,C 2009-08-22 00:15:15 +00:00
psi88 Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now 2009-09-13 00:08:01 +00:00
py-biopython - Update to 138038 2009-09-04 20:41:25 +00:00
pycogent - Switch SourceForge ports to the new File Release System: categories starting with B,C 2009-08-22 00:15:15 +00:00
pyfasta pyfasta is a python module for fast, memory-efficient, pythonic 2009-11-18 05:53:17 +00:00
pymol
rasmol
recombine
ruby-bio
seaview - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
seqio
sim4
ssaha
t_coffee
tinker Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now 2009-09-13 00:08:01 +00:00
treepuzzle
treeviewx - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
tRNAscan-SE
velvet Velvet is a de novo genomic assembler specially designed for short read 2009-11-07 01:23:59 +00:00
wise
xdrawchem - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
xmolwt
Makefile pyfasta is a python module for fast, memory-efficient, pythonic 2009-11-18 05:53:17 +00:00