9480dee06a
- Make DATADIR/EXAMPLESDIR/DOCSDIR safe
- Don't hardcode ${CPIO}
PR: ports/82154
Submitted by: George Hartzell <hartzell@alerce.com>
Approved by: maintainer
362 lines
22 KiB
Plaintext
362 lines
22 KiB
Plaintext
%%PORTDOCS%%%%DOCSDIR%%/README
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%%PORTDOCS%%%%DOCSDIR%%/example
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%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_gen.pl
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%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_input
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%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_long_input
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%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_long_score_output
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%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_output
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%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_score_output
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%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_test.pl
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%%PORTDOCS%%%%EXAMPLESDIR%%/long_seq_input
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%%PORTDOCS%%%%EXAMPLESDIR%%/long_seq_output
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%%PORTDOCS%%%%EXAMPLESDIR%%/not_for_production.lib
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_input
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/AGAG.for
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/AGAG.rev
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-02.txt.for
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-02.txt.rev
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-03.txt.for
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-03.txt.rev
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-06.txt.for
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-06.txt.rev
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-19.txt.for
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-19.txt.rev
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-21.txt.for
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-21.txt.rev
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP04-07.txt.for
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP04-07.txt.rev
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test.for
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test.rev
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test_w_middle.for
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test_w_middle.int
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/long_seq.for
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test_w_middle.rev
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/long_seq.rev
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/targets_test.for
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/targets_test.rev
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_output
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_boundary1_input
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_boundary1_output
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_boundary_input
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_check_input
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_check_output
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_end_pathology_input
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_end_pathology_output
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/MAX_PRIMER_LENGTH.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_dna_conc.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_1.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_2.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_3.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_4.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_1.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_2.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_3.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_1.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_2.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_3.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_num_ns.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_num_ns_int.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_1.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_2.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_3.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_4.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_any.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_salt_conc.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_any_int.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_end.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_end_int.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/empty_1.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/empty_product_size.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/gc_clamp_min_size.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/incorrect_task.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/io_gc_content_obj_fn.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/io_obj_fn.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_min_tm.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_min_tm_int.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_opt_tm.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_opt_tm_int.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_limit_int.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_min_product.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_min_product_int.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/min_opt_tm.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/min_opt_tm_int.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/mishyb_obj_fn.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/mispr_obj_fn.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/no=.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/no_terminal=.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_max_size.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_max_size_int.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_min_size.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_min_size_int.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/pair_mispr.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/pr_gc_content_obj_fn.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/product_size_obj_fn.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/product_tm_obj_fn.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err1.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err2.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err3.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err4.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err5.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err6.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err1.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err2.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err3.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err4.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err5.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err6.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality1.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality2.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality3.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality4.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/too_many_product_sizes.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/zero_min_size.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/zero_num_return.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/MAX_PRIMER_LENGTH.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_dna_conc.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_1.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_2.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_3.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_4.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_1.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_2.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_3.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_1.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_2.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_3.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_num_ns.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_num_ns_int.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_1.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_2.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_3.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_4.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_salt_conc.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_any.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/empty_1.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_end.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_any_int.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_end_int.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/empty_product_size.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/gc_clamp_min_size.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/incorrect_task.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/io_gc_content_obj_fn.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/io_obj_fn.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_min_tm.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_min_tm_int.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_opt_tm.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_opt_tm_int.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_limit_int.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_min_product.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_min_product_int.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/min_opt_tm.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/min_opt_tm_int.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/mishyb_obj_fn.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/mispr_obj_fn.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/no=.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/no_terminal=.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_max_size.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_max_size_int.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_min_size.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_min_size_int.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/pair_mispr.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/pr_gc_content_obj_fn.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/product_size_obj_fn.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/product_tm_obj_fn.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err1.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err2.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err3.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err4.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err5.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err6.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err1.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err2.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err3.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err4.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err5.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err6.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality1.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality2.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality3.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality4.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/too_many_product_sizes.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/zero_min_size.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/zero_num_return.out
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/MAX_PRIMER_LENGTH.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_1.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_dna_conc.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_1.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_2.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_3.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_4.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_2.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_3.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_1.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_2.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_3.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_num_ns.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_num_ns_int.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_1.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_2.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_3.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_4.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_salt_conc.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_any.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_any_int.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_end.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_end_int.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/empty_1.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/empty_product_size.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/gc_clamp_min_size.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/incorrect_task.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/io_gc_content_obj_fn.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/io_obj_fn.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_min_tm.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_min_tm_int.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_opt_tm.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_opt_tm_int.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_limit_int.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_min_product.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_min_product_int.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/min_opt_tm.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/min_opt_tm_int.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/mishyb_obj_fn.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/mispr_obj_fn.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/no=.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/no_terminal=.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_max_size.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_max_size_int.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_min_size.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_min_size_int.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/pair_mispr.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/pr_gc_content_obj_fn.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/product_size_obj_fn.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/product_tm_obj_fn.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err1.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err2.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err3.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err4.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err5.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err6.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err1.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err2.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err3.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err4.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err5.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err6.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality1.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality2.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality3.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality4.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/too_many_product_sizes.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/zero_min_size.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/zero_num_return.out2
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_human_input
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_human_output
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_input
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_internal1_input
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_internal_input
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_internal_output
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/AGAG.for
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/AGAG.rev
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-02.txt.for
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-02.txt.rev
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-03.txt.for
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-03.txt.rev
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06-with-repeat1.for
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06-with-repeat1.int
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06-with-repeat1.rev
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06-with-repeat2.for
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06-with-repeat2.int
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06-with-repeat2.rev
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06-with-repeat3.for
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06-with-repeat3.int
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06-with-repeat3.rev
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06.txt.for
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-06.txt.rev
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-19.txt.for
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-19.txt.rev
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-21.txt.for
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP01-21.txt.rev
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP04-07.txt.for
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/SP04-07.txt.rev
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/case_problem_test.for
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/case_problem_test.rev
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/included_test.for
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/included_test.rev
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/included_test_w_middle.for
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/included_test_w_middle.int
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/included_test_w_middle.rev
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/long_seq.for
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/long_seq.rev
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/targets_test.for
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_list_last/targets_test.rev
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_mispriming_boundary1_input
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_mispriming_boundary1_output
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_mispriming_boundary2_input
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_mispriming_boundary2_output
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_mispriming_input
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_mispriming_long_lib_input
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_mispriming_long_lib_output
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_mispriming_output
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_must_use_input
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_must_use_output
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_num_best_input
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_num_best_output
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_obj_fn_input
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_obj_fn_output
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_output
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_position_penalty_input
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_position_penalty_output
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_quality_boundary_input
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_quality_boundary_output
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_rat_input
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_rat_output
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_repeat_boundary1_lib
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_repeat_boundary2_lib
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_repeat_long_lib
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_start_codon_input
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_start_codon_output
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_syntax_input
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_syntax_output
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_task_input
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_task_output
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_test.pl
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%%PORTDOCS%%%%EXAMPLESDIR%%/repeat_lib1
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%%PORTDOCS%%%%EXAMPLESDIR%%/repeat_lib2
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%%PORTDOCS%%%%EXAMPLESDIR%%/repeat_lib3
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%%PORTDOCS%%%%EXAMPLESDIR%%/repeat_lib4
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%%PORTDOCS%%%%EXAMPLESDIR%%/repeat_lib5
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%%PORTDOCS%%%%EXAMPLESDIR%%/repeat_lib6
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%%PORTDOCS%%%%EXAMPLESDIR%%/long_seq_tm_test.pl
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%%PORTDOCS%%%%EXAMPLESDIR%%/not_for_production_Ns.lib
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%%PORTDOCS%%%%EXAMPLESDIR%%/not_for_production_Xs.lib
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_boundary1_formatted_output
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_boundary_formatted_output
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_boundary_output
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_internal1_formatted_output
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_internal1_output
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_internal_formatted_output
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_lib_amb_codes_input
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_lib_amb_codes_output
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_mispriming_boundary1_formatted_output
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_mispriming_boundary2_formatted_output
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_mispriming_formatted_output
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_must_use_formatted_output
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_position_penalty_formatted_output
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_task_formatted_output
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_template_mispriming_input
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%%PORTDOCS%%%%EXAMPLESDIR%%/primer_template_mispriming_output
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bin/primer3
|
|
%%DATADIR%%/Copyright
|
|
@dirrm %%DATADIR%%
|
|
%%PORTDOCS%%@dirrm %%DOCSDIR%%
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/primer1_list_last
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/primer_global_err
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/primer_list_last
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%
|