..
abyss
devel/boost-*: update to 1.71.0
2019-08-19 15:35:27 +00:00
artemis
avida
babel
bamtools
bcftools
Convert to UCL & cleanup pkg-message (categories a-c)
2019-08-13 16:00:39 +00:00
bedtools
biococoa
bolt-lmm
devel/boost-*: update to 1.71.0
2019-08-19 15:35:27 +00:00
bowtie
bowtie2
bwa
canu
devel/boost-*: update to 1.71.0
2019-08-19 15:35:27 +00:00
cd-hit
cdbfasta
checkm
biology/checkm: Update 1.0.17 -> 1.0.18
2019-08-19 08:25:29 +00:00
chemeq
clustal-omega
clustalw
consed
Convert to UCL & cleanup pkg-message (categories a-c)
2019-08-13 16:00:39 +00:00
cufflinks
devel/boost-*: update to 1.71.0
2019-08-19 15:35:27 +00:00
cytoscape
ddocent
diamond
Convert to UCL & cleanup pkg-message (categories a-c)
2019-08-13 16:00:39 +00:00
dsr-pdb
devel/boost-*: update to 1.71.0
2019-08-19 15:35:27 +00:00
emboss
Convert to UCL & cleanup pkg-message (categories a-c)
2019-08-13 16:00:39 +00:00
exonerate
fasta
Convert to UCL & cleanup pkg-message (categories a-c)
2019-08-13 16:00:39 +00:00
fasta3
Convert to UCL & cleanup pkg-message (categories a-c)
2019-08-13 16:00:39 +00:00
fastahack
fastdnaml
fastool
fastp
fastqc
fasttree
fastx-toolkit
figtree
fluctuate
freebayes
garlic
gatk
gemma
gff2ps
gmap
Convert to UCL & cleanup pkg-message (categories a-c)
2019-08-13 16:00:39 +00:00
gperiodic
biology/gperiodic: fix NLS and other rough edges
2019-08-23 15:26:55 +00:00
graphlan
grappa
groopm
hhsuite
hisat2
hmmer
Convert to UCL & cleanup pkg-message (categories a-c)
2019-08-13 16:00:39 +00:00
htslib
hyphy
igv
infernal
iolib
iqtree
biology/iqtree: Update to version 1.6.12
2019-08-27 01:19:11 +00:00
jalview
jellyfish
kallisto
lagan
Convert to UCL & cleanup pkg-message (categories a-c)
2019-08-13 16:00:39 +00:00
lamarc
libbigwig
libgtextutils
libsbml
linux-foldingathome
mafft
mapm3
migrate
minimap2
molden
mopac
mothur
mrbayes
mummer
muscle
ncbi-blast+
ncbi-cxx-toolkit
ncbi-toolkit
Convert to UCL & cleanup pkg-message (categories a-c)
2019-08-13 16:00:39 +00:00
ngs-sdk
biology/ngs-sdk: Update 2.9.6 -> 2.10.0
2019-08-31 15:09:47 +00:00
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Cluster
p5-Bio-Coordinate
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-FeatureIO
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-BioPerl
Update to 1.007006 (1.7.6)
2019-09-07 22:44:02 +00:00
p5-BioPerl-Run
p5-transdecoder
p5-TrimGalore
paml
pbbam
devel/boost-*: update to 1.71.0
2019-08-19 15:35:27 +00:00
pbcopper
devel/boost-*: update to 1.71.0
2019-08-19 15:35:27 +00:00
pbseqan
pear-merger
phrap
phred
Convert to UCL & cleanup pkg-message (categories a-c)
2019-08-13 16:00:39 +00:00
phylip
phyml
plinkseq
primer3
prodigal
prodigy-lig
protomol
psi88
py-biom-format
py-biopython
py-bx-python
py-cutadapt
py-dnaio
py-fastTSNE
py-Genesis-PyAPI
py-gffutils
py-gtfparse
py-loompy
py-macs2
py-orange3-bioinformatics
py-orange3-single-cell
py-pyfaidx
py-pysam
biology/py-pysam: Update 0.15.2 -> 0.15.3
2019-08-31 15:49:18 +00:00
py-xenaPython
pycogent
pyfasta
python-nexus
rainbow
recombine
Fix after gets(3) retirement using gets_s(3).
2019-09-02 05:00:43 +00:00
ruby-bio
rubygem-bio
samtools
Convert to UCL & cleanup pkg-message (categories a-c)
2019-08-13 16:00:39 +00:00
seaview
seqan
seqan1
seqan-apps
devel/boost-*: update to 1.71.0
2019-08-19 15:35:27 +00:00
seqio
seqtk
seqtools
sim4
slclust
smithwaterman
stacks
star
stringtie
t_coffee
tabixpp
treekin
treepuzzle
trimadap
trimmomatic
tRNAscan-SE
ugene
unanimity
devel/boost-*: update to 1.71.0
2019-08-19 15:35:27 +00:00
vcflib
vcftools
velvet
viennarna
vsearch
wise
Convert to UCL & cleanup pkg-message (categories a-c)
2019-08-13 16:00:39 +00:00
Makefile
