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abyss
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ad2vcf
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biology/ad2vcf: Remove comment used to silence portlint
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2021-06-11 10:39:02 -05:00 |
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artemis
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avida
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babel
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bamtools
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bbmap
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bcftools
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math/gsl: update to 2.7
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2021-06-16 21:31:27 +02:00 |
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bedtools
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bioawk
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biococoa
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biolibc
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biology/biolibc: Remove comment used to silence portlint
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2021-06-11 10:38:27 -05:00 |
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bioparser
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biosoup
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biostar-tools
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biostar-tools: Add sra-tools dependency to metaport
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2021-06-22 13:00:23 -05:00 |
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bolt-lmm
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bowtie
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bowtie2
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bwa
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canu
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cd-hit
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biology/cd-hit: fix build on powerpc
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2021-06-10 00:35:36 +00:00 |
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cdbfasta
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checkm
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clustal-omega
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clustalw
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cufflinks
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cytoscape
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ddocent
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diamond
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dsr-pdb
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edlib
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emboss
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exonerate
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fasta
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fasta3
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fastahack
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fastdnaml
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fastool
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fastp
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fastqc
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fasttree
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biology/fasttree: fix build on armv7
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2021-06-15 08:41:19 +00:00 |
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fastx-toolkit
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figtree
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fluctuate
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freebayes
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garlic
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gatk
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gcta
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gemma
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math/gsl: update to 2.7
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2021-06-16 21:31:27 +02:00 |
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generand
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gff2ps
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gmap
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gperiodic
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graphlan
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groopm
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haplohseq
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hhsuite
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hisat2
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hmmer
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htslib
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hyphy
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biology/hyphy: Update to 2.5.31
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2021-06-05 20:00:24 -03:00 |
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igv
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infernal
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iolib
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iqtree
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jalview
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biology/jalview: Broken on 11
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2021-06-05 11:53:07 -07:00 |
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jellyfish
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kallisto
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lamarc
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libbigwig
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libgtextutils
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libsbml
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linux-foldingathome
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mafft
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mapm3
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migrate
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minimap2
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biology/minimap2: Update to 2.20
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2021-05-29 16:06:34 -05:00 |
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mmseqs2
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biology/mmseqs2: Ultra fast and sensitive sequence search and clustering suite
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2021-06-24 12:31:42 -05:00 |
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molden
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graphics/mesa-libs: Bump reverse deps for libglvnd
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2021-06-22 11:53:08 -07:00 |
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mopac
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mothur
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mrbayes
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mummer
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muscle
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ncbi-blast+
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ncbi-cxx-toolkit
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ncbi-entrez-direct
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ncbi-toolkit
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ncbi-vdb
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ngs-sdk
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p5-AcePerl
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p5-Bio-ASN1-EntrezGene
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p5-Bio-Cluster
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p5-Bio-Coordinate
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p5-Bio-Das
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p5-Bio-Das-Lite
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p5-Bio-DB-EMBL
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p5-Bio-DB-NCBIHelper
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p5-Bio-FeatureIO
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p5-Bio-GFF3
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p5-Bio-Glite
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p5-Bio-Graphics
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p5-Bio-MAGETAB
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p5-Bio-NEXUS
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p5-Bio-Phylo
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p5-Bio-SCF
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p5-Bio-Variation
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p5-BioPerl
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p5-BioPerl-Run
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p5-transdecoder
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p5-TrimGalore
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paml
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pbbam
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pbseqan
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peak-classifier
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biology/peak-classifier: Classify peaks based on GFF features
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2021-06-14 11:40:33 -05:00 |
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pear-merger
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phrap
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phred
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phyml
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picard-tools
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plink
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pooler
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primer3
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prodigal
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prodigy-lig
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protomol
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psi88
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py-bigwig
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py-biom-format
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py-biopython
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py-bx-python
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py-crossmap
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py-cutadapt
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py-dnaio
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py-ete3
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py-Genesis-PyAPI
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py-gffutils
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py-gtfparse
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py-hits
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py-loompy
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py-macs2
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py-multiqc
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py-orange3-bioinformatics
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py-orange3-single-cell
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py-pandas-charm
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py-pyfaidx
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py-pysam
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py-resdk
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py-scikit-bio
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py-xenaPython
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pyfasta
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python-nexus
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rainbow
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rampler
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readseq
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recombine
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ruby-bio
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rubygem-bio
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rubygem-bio-executables
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rubygem-bio-old-biofetch-emulator
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rubygem-bio-shell
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samtools
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scrm
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seaview
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seqan
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seqan1
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seqan3
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biology/seqan3: Update 3.0.2-1195 -> 3.0.3
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2021-05-29 22:38:08 -07:00 |
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seqan-apps
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biology/seqan-apps: fix packaging on armv7
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2021-06-21 08:11:25 +00:00 |
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seqio
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seqkit
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seqtk
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sim4
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slclust
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smithwaterman
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snpeff
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spoa
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sra-tools
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biology/sra-tools: NCBI's toolkit for handling data in INSDC Sequence Read Archives
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2021-06-22 12:55:15 -05:00 |
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stacks
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star
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stringtie
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subread
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tabixpp
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taxonkit
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biology/taxonkit: New port: Practical and efficient NCBI taxonomy toolkit
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2021-05-26 15:25:22 -07:00 |
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treekin
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math/lapack: +math/blas et al., upgrade to 3.9.1
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2021-06-13 19:48:12 +02:00 |
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treepuzzle
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trimadap
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trimmomatic
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tRNAscan-SE
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ucsc-userapps
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ugene
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graphics/mesa-libs: Bump reverse deps for libglvnd
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2021-06-22 11:53:08 -07:00 |
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unikmer
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biology/unikmer: Update 0.18.0 -> 0.18.1
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2021-06-24 15:06:35 -07:00 |
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vcf2hap
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biology/vcf2hap: Remove comment used to silence portlint
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2021-06-11 10:40:11 -05:00 |
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vcf-split
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biology/vcf-split: Update to 0.1.2
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2021-06-11 10:05:19 -05:00 |
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vcflib
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vcftools
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velvet
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viennarna
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math/gsl: update to 2.7
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2021-06-16 21:31:27 +02:00 |
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vsearch
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biology/vsearch: Update to 2.17.1
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2021-06-19 07:33:58 -05:00 |
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vt
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wise
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Makefile
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biology/mmseqs2: Ultra fast and sensitive sequence search and clustering suite
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2021-06-24 12:31:42 -05:00 |
