..
2d-rewriter
science/2d-rewriter:
2020-03-29 05:55:51 +00:00
abinit
Mark BROKEN: fails to build
2020-05-29 08:38:54 +00:00
afni
science/afni: update to 20.2.19
2020-09-30 11:11:44 +00:00
agrum
science/agrum: Update 0.18.0 -> 0.18.1
2020-07-20 19:12:02 +00:00
aircraft-datcom
science/aircraft-datcom: Unbreak build with GCC 10
2020-07-04 11:07:57 +00:00
ALPSCore
- Swap back from net/openmpi3 to net/openmpi
2020-04-21 21:26:56 +00:00
antioch
apbs
science/apbs: fix build on current
2020-08-27 18:37:59 +00:00
atompaw
avogadro2
avogadrolibs
science/avogadrolibs: Remove a broken option VTK set to default by mistake
2020-04-27 16:09:56 +00:00
bagel
Chase ScaLAPACK´s upgrade and resolve conflict between cblas and openblas.
2020-06-14 09:14:03 +00:00
bddsolve
berkeleygw
science/berkeleygw: Unbreak build with GCC 10
2020-06-25 06:50:17 +00:00
bodr
buddy
cdcl
science/cdcl: fix build on recent current
2020-08-28 16:09:15 +00:00
cdf
science/cdf: Unbreak build with GCC 10
2020-07-04 10:40:42 +00:00
cdk
cdo
Remove ACCEPT_USE_OF_DEPRECATED_PROJ_API_H
2020-05-16 10:51:44 +00:00
cgnslib
Upgrade to v4.1.2 and add a test target.
2020-09-13 09:26:10 +00:00
cgribex
Update to 1.9.4
2020-05-16 10:51:49 +00:00
checkmol
chemical-mime-data
chemps2
Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas
2020-05-06 16:39:12 +00:00
chemtool
science/chemtool: Fix build on 13 by adding -fcommon
2020-09-20 23:32:51 +00:00
chemtool-devel
chrono
- Update net/openmpi to 4.0.3 (openmpi 1 is deprecated)
2020-04-19 09:49:02 +00:00
clhep
clipper
code_saturne
Upgrade to v6.1.2 (6.2.0 is still an intermediate release).
2020-09-13 19:31:29 +00:00
colt
coordgenlibs
science/coordgenlibs: Update 1.4.0-6 -> 1.4.1
2020-06-29 00:46:52 +00:00
cp2k
Re-add port: science/cp2k: Quantum chemistry and solid state physics software package; Update 6.1.0 -> 7.1.0-20200518
2020-05-20 02:27:15 +00:00
cp2k-data
science/cp2k-data: Update 6.1.0 -> 7.1.0
2020-05-25 04:00:02 +00:00
crf++
Clean up some things
2020-09-24 08:50:25 +00:00
dalton
Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas.
2020-05-06 16:11:14 +00:00
datawarrior
Deprecate ports broken for more than 6 months
2020-07-26 07:32:00 +00:00
dcl
science/dcl: Unbreak build with GCC 10
2020-07-04 06:54:39 +00:00
devisor
dftbplus
science/dftbplus: Change to python3.
2020-05-20 00:36:40 +00:00
dkh
dlib-cpp
science/dlib-cpp and science/py-dlib: Update to 19.21.
2020-08-20 09:50:18 +00:00
dlpoly-classic
science/dlpoly-classic: Change dependency to openmpi3
2020-04-12 14:31:17 +00:00
drawxtl
dvc
Fix build post-r547793.
2020-09-09 15:24:00 +00:00
eccodes
Use local patch file instead of PATCHFILES
2020-09-19 15:35:11 +00:00
elk
science/elk: Update 5.2.14 -> 6.8.4
2020-06-30 15:12:48 +00:00
elmerfem
science/elmerfem: Update to 8.4.20200708 and fix dependencies
2020-07-31 09:49:03 +00:00
epte
science/epte: fix build on recent current
2020-08-28 20:59:08 +00:00
erd
ergo
Some days it does not pay to get out of bed.
2020-05-15 04:25:56 +00:00
erkale
- Update math/armadillo to 9.900.2
2020-08-10 13:12:01 +00:00
erkale-pseudopotentials
science/erkale-pseudopotentials: Update g20190114 -> g20200426
2020-05-07 00:32:03 +00:00
fastcap
science/fastcap: fix build on recent current
2020-08-28 22:00:33 +00:00
fasthenry
science/fasthenry: fix build on recent current
2020-08-28 22:02:42 +00:00
fastjet
science/fastjet: Enable plugins; Fix the config program
2020-05-26 17:10:15 +00:00
fisicalab
fsom
fvcom
fvcom-mpi
- Update net/openmpi to 4.0.3 (openmpi 1 is deprecated)
2020-04-19 09:49:02 +00:00
gabedit
science/gabedit: Update 2.5.1-061218 -> 2.5.1-300720; Fix build on 13
2020-09-20 22:12:22 +00:00
gamess-us
Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas.
2020-05-06 16:11:14 +00:00
gchemutils
gdma
getdp
ghemical
science/ghemical: Not compatible with the upcoming OpenBabel-3 => disable this internal option
2020-05-10 21:40:08 +00:00
ghmm
gnudatalanguage
Unbreak bulk -a
2020-09-19 14:15:42 +00:00
gpaw-setups
gramps
Convert the tree to use PY_PILLOW
2020-03-24 19:54:57 +00:00
grib_api
gromacs
science/gromacs: Update 2020.2 -> 2020.3
2020-07-16 06:32:45 +00:00
gsmc
gtamsanalyzer
h5utils
h5z-zfp
harminv
hdf
science/hdf: update to 4.2.15 to fix build on powerpc64
2020-08-22 20:43:44 +00:00
hdf5
Revert r529778, ports depending on it were not tested
2020-03-29 20:41:45 +00:00
hdf5-18
healpix
hepmc3
science/hepmc3: Update science/hepmc3: Update 3.2.1 -> 3.2.2
2020-06-15 04:02:53 +00:00
highfive
science/highfive: Update 2.2.1 -> 2.2.2
2020-08-03 03:29:56 +00:00
hypre
science/hypre: Update 2.19.0 -> 2.20.0
2020-09-25 19:01:00 +00:00
iboview
Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas
2020-05-06 16:39:12 +00:00
InsightToolkit
- Update devel/gdcm to 3.0.7.
2020-07-04 20:53:55 +00:00
isaac-cfd
science/isaac-cfd: Unbreak build with GCC 10
2020-07-04 08:00:41 +00:00
jdftx
science/jdftx: Update 1.5.0 -> 1.6.0
2020-06-15 20:29:51 +00:00
jmol
science/jmol: Update 14.31.7 -> 14.31.8
2020-09-29 08:25:14 +00:00
jstrack
kalzium
MFH: r554144
2020-11-06 04:27:31 +00:00
kim-api
kst2
Force to rebuild after math/matio update
2020-09-26 16:30:14 +00:00
lammps
science/lammps: Update 24Aug2020 -> 18Sep2020
2020-09-19 03:35:55 +00:00
lamprop
latte
science/latte: Update 1.2.1 -> 1.2.2
2020-05-07 01:02:37 +00:00
libaec
libccp4
science/libccp4: Unbreak build with GCC 10
2020-07-04 11:10:29 +00:00
libcint
science/libcint: Update 3.0.20 -> 3.1.1
2020-08-27 05:37:22 +00:00
libctl
libefp
libgeodecomp
- Fix build
2020-09-20 07:35:09 +00:00
libghemical
libgridxc
MFH: r552183
2020-10-13 08:13:39 +00:00
libint
libint2
libkml
Convert REINPLACE_CMD to patch files
2020-05-08 20:50:41 +00:00
liblinear
Update to 2.41
2020-08-27 18:43:36 +00:00
libmsym
liboglappth
libquantum
libssm
libsvm
libsvm-python
libvdwxc
libxc
science/libxc: remove patch
2020-05-02 20:20:28 +00:00
liggghts
science/liggghts: Remove the unnecessary VTK_DIR
2020-04-27 16:26:42 +00:00
luscus
science/luscus: Fix build on 13
2020-09-21 16:24:03 +00:00
madness
Update devel/tbb to 2020.3 and bump dependent ports' revisions
2020-07-17 10:12:25 +00:00
maeparser
massxpert
Sanitize COMMENT per Section 5.6 of the FreeBSD Porter's Handbook (part 6).
2020-05-28 08:43:29 +00:00
mbdyn
Mark as BROKEN on powerpc64:
2020-05-18 01:38:12 +00:00
mcstas
mcstas-comps
mcxtrace
mcxtrace-comps
mdynamix
medit
metaphysicl
minc2
mmdb2
mmtf-cpp
mol2ps
molgif
molscript
molsketch
mpb
Change the maintainer entry in rhurlin's ports
2020-09-10 19:17:38 +00:00
mpqc
msms
multiwfn
Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas.
2020-05-06 16:11:14 +00:00
namd
nest
netcdf
netcdf-cxx
netcdf-fortran
science/netcdf-fortran: Unbreak build with GCC 10
2020-07-26 17:58:54 +00:00
nifticlib
nwchem
science/nwchem: Update to 7.0.0-release
2020-05-07 07:58:36 +00:00
nwchem-data
science/nwchem-data: Update 6.8.1.20190125 -> 7.0.0
2020-05-07 02:54:17 +00:00
octopus
Mark BROKEN
2020-05-16 10:03:40 +00:00
openbabel
openkim
openkim-models
opensim-core
Move devel/swig30 to devel/swig and update to 4.0.1
2020-06-17 18:17:45 +00:00
opensph
science/opensph: Use USE_WX instead of the LIB_DEPENDS with the WX library
2020-09-01 20:00:46 +00:00
opsin
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
Update to 1.38
2020-07-24 07:10:54 +00:00
p5-Geo-Coordinates-Converter
Add NO_ARCH
2020-04-21 19:47:40 +00:00
p5-Geo-Coordinates-Converter-iArea
Cosmetic change
2020-04-21 19:37:40 +00:00
p5-Geo-WebService-Elevation-USGS
- Update to 0.117
2020-04-18 08:35:03 +00:00
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit
packmol
pagmo2
science/pagmo2: Update 2.15.0-95 -> 2.15.0-102
2020-09-19 19:52:53 +00:00
paje
pcmsolver
PETSc
plumed
science/plumed: Update 2.6.0 -> 2.6.1
2020-07-16 19:51:30 +00:00
pnetcdf
- Update net/openmpi to 4.0.3 (openmpi 1 is deprecated)
2020-04-19 09:49:02 +00:00
pulseview
science/pulseview: prepare for Qt5-5.15
2020-05-30 10:09:51 +00:00
py-abipy
math/py-seaborn: Update to 0.10.1
2020-05-31 21:03:37 +00:00
py-asdf
Update to 2.7.1
2020-08-21 21:24:31 +00:00
py-ase
science/py-ase: Update 3.20.0 -> 3.20.1
2020-09-05 06:05:19 +00:00
py-avogadrolibs
py-cdo
py-chainer
Bump PORTREVISION for devel/protobuf shlib change
2020-08-30 20:19:41 +00:00
py-chainer-chemistry
science/py-chainer-chemistry: Update 0.7.0 -> 0.7.1
2020-08-17 20:05:58 +00:00
py-chempy
science/py-chempy: Update 0.7.11 -> 0.7.12
2020-07-06 17:14:00 +00:00
py-coards
py-DendroPy
py-dlib
science/py-dlib: Fix plist.
2020-08-29 18:15:01 +00:00
py-eccodes-python
py-geolinks
py-geomet
py-geometer
Update to 0.2.3
2020-07-09 18:09:16 +00:00
py-geometric
Unbreak bulk -a
2020-09-19 14:15:42 +00:00
py-gpaw
Mark BROKEN
2020-05-17 18:33:45 +00:00
py-GPy
science/py-GPy: Change to USES=python because it builds fine with python-3.7
2020-04-08 06:35:03 +00:00
py-GPyOpt
science/py-GPyOpt: Update 1.2.5 -> 1.2.6
2020-04-08 06:39:07 +00:00
py-gsd
science/py-gsd: Update 2.1.2 -> 2.2.0
2020-09-06 14:40:22 +00:00
py-h5json
py-h5py
py-kim-query
science/py-kim-query: Update 1.0.0 -> 1.1.0
2020-08-28 19:44:09 +00:00
py-kinematics
py-kliff
Unbreak bulk -a
2020-07-14 07:59:28 +00:00
py-liac-arff
Update to 2.5.0
2020-09-05 10:10:15 +00:00
py-lifelines
Unbreak bulk -a
2020-09-19 14:15:42 +00:00
py-MDAnalysis
Unbreak bulk -a
2020-06-13 15:05:44 +00:00
py-MDAnalysisTests
Unbreak bulk -a
2020-06-13 15:05:44 +00:00
py-mdp
science/py-mdp: remove optional expired dependency on devel/py-pp
2020-08-15 11:19:52 +00:00
py-mmtf-python
py-molmod
science/py-molmod: Update 1.4.7 -> 1.4.8
2020-06-26 01:57:29 +00:00
py-moltemplate
science/py-moltemplate: Update 2.18.3 -> 2.18.6
2020-09-29 08:19:32 +00:00
py-netCDF4
py-obspy
Unbreak bulk -a
2020-09-19 14:15:42 +00:00
py-oddt
py-OpenFermion
Unbreak bulk -a
2020-09-19 14:15:42 +00:00
py-openpiv
science/py-openpiv: update to 0.22.3
2020-09-28 21:18:16 +00:00
py-paida
py-paramz
py-phono3py
Unbreak bulk -a
2020-09-19 14:15:42 +00:00
py-phonopy
science/py-phonopy: Update 2.7.1 -> 2.8.0
2020-09-24 01:03:56 +00:00
py-pupynere
py-pyaixi
py-pycsw
py-pydicom
- Update to 1.4.2
2020-04-22 08:01:18 +00:00
py-PyFR
science/py-PyFR: Update 1.9.0 -> 1.10.0
2020-05-29 05:48:10 +00:00
py-pygeodesy
py-pygeometa
py-pygmo2
science/py-pygmo2: Update 2.15.0-121 -> 2.15.0-139
2020-09-19 19:55:21 +00:00
py-pymatgen
- Update WWW
2020-05-26 09:32:48 +00:00
py-pymol
pymol fails to build with python 2.7
2020-05-29 08:42:46 +00:00
py-pyosf
py-pysal
py-pyteomics
Unbreak bulk -a
2020-09-19 14:15:42 +00:00
py-qcelemental
science/py-qcelemental: Update 0.12.0 -> 0.16.0
2020-09-13 19:43:38 +00:00
py-qcengine
science/py-qcengine: Update 0.10.0 -> 0.16.0
2020-09-13 19:47:28 +00:00
py-qspin
py-quantities
py-rmf
Move devel/swig30 to devel/swig and update to 4.0.1
2020-06-17 18:17:45 +00:00
py-rmsd
py-ruffus
py-scikit-fuzzy
Unbreak bulk -a
2020-09-19 14:15:42 +00:00
py-scikit-learn
- Update WWW
2020-06-17 09:35:01 +00:00
py-scikit-optimize
Update to 0.8.1
2020-09-06 15:37:09 +00:00
py-scikit-sparse
py-scimath
- Update to 4.2.0
2020-09-25 03:11:49 +00:00
py-scipy
science/py-scipy: Unbreak build with GCC 10
2020-07-05 11:02:17 +00:00
py-scoria
science/py-scoria: Update 1.0.4 -> 1.0.5
2020-03-28 04:04:51 +00:00
py-SimpleSpectral
py-spglib
science/py-spglib: Update 1.15.1 -> 1.16.0
2020-08-03 07:26:39 +00:00
py-tensorflow
Bump PORTREVISION for devel/protobuf shlib change
2020-08-30 20:19:41 +00:00
py-veusz
Update py-sip to 4.19.21 and qscintilla2 to 2.11.4
2020-04-11 05:04:40 +00:00
pybrain
Sanitize COMMENT per Section 5.6 of the FreeBSD Porter's Handbook (part 4).
2020-05-27 15:31:55 +00:00
pynn
qbox
science/qbox: Update 1.71.5 -> 1.72.0
2020-09-25 19:01:45 +00:00
qcl
qiskit-aer
devel/libfmt: Update to 7.0.3
2020-09-07 21:19:41 +00:00
qmcpack
Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas.
2020-05-06 16:11:14 +00:00
quantum-espresso
quantum-espresso-pseudopotentials
qwalk
R-cran-AMORE
math/R: Update to version 4.0.0
2020-05-05 16:07:53 +00:00
R-cran-bayesm
math/R: Update to version 4.0.0
2020-05-05 16:07:53 +00:00
R-cran-cmprsk
- Update to 2.2-10
2020-06-14 12:16:54 +00:00
R-cran-DCluster
math/R: Update to version 4.0.0
2020-05-05 16:07:53 +00:00
R-cran-e1071
math/R: Update to version 4.0.0
2020-05-05 16:07:53 +00:00
R-cran-eco
math/R: Update to version 4.0.0
2020-05-05 16:07:53 +00:00
R-cran-Epi
- Update to 2.41
2020-08-10 08:08:06 +00:00
R-cran-epicalc
math/R: Update to version 4.0.0
2020-05-05 16:07:53 +00:00
R-cran-etm
- Update to 1.1.1
2020-09-09 08:59:47 +00:00
R-cran-FAdist
math/R: Update to version 4.0.0
2020-05-05 16:07:53 +00:00
R-cran-fastICA
math/R: Update to version 4.0.0
2020-05-05 16:07:53 +00:00
R-cran-kernlab
math/R: Update to version 4.0.0
2020-05-05 16:07:53 +00:00
R-cran-snow
math/R: Update to version 4.0.0
2020-05-05 16:07:53 +00:00
R-cran-som
math/R: Update to version 4.0.0
2020-05-05 16:07:53 +00:00
R-cran-udunits2
math/R: Update to version 4.0.0
2020-05-05 16:07:53 +00:00
rdkit
Convert the tree to use PY_PILLOW
2020-03-24 19:54:57 +00:00
rmf
rubygem-ai4r
rubygem-cdo
Update to 1.5.1
2020-05-16 11:04:45 +00:00
rubygem-rgeo
rubygem-rgeo-geojson
rubygem-rgeo-proj4
rubygem-rgeo-shapefile
Update to 3.0.0
2020-09-05 21:35:09 +00:00
rubygem-ruby-dcl
rubygem-ruby-netcdf
scidavis
science/scidavis:
2020-05-27 20:10:56 +00:00
siesta
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo
science/silo: Backport of patches from Debian to support Python 3
2020-09-27 11:32:55 +00:00
simbody
Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas
2020-05-06 16:39:12 +00:00
simgrid
science/simgrid: add libunwind to dependencies on powerpc64
2020-09-12 19:19:49 +00:00
simint
simlib
simsmith
Sanitize COMMENT per Section 5.6 of the FreeBSD Porter's Handbook (part 6).
2020-05-28 08:43:29 +00:00
smoldyn
sparta
science/sparta: Update 24Jan2020 -> 6Jul2020
2020-07-13 23:41:01 +00:00
spglib
science/spglib: Update 1.15.1 -> 1.16.0
2020-08-03 07:26:08 +00:00
step
MFH: r554144
2020-11-06 04:27:31 +00:00
svmlight
szip
teem
tfel
tinker
science/tinker: Update 8.7.2 -> 8.8.1
2020-08-17 20:37:46 +00:00
udunits
v_sim
- Fix build without NLS (missing gettext-tools dependency) and without EXAMPLES (broken patching)
2020-08-04 16:00:43 +00:00
vipster
devel/libfmt: Update to 7.0.3
2020-09-07 21:19:41 +00:00
vmd
voro++
votca
science/votca: Update 1.6.1 -> 1.6.2
2020-08-29 18:44:12 +00:00
wannier90
wwplot
wxmacmolplt
x11-toolkits/wxgtk30: Update to 3.0.5.1
2020-05-17 05:55:12 +00:00
xcrysden
science/xcrysden: Fix build on 13 by adding -fcommon
2020-09-21 00:45:07 +00:00
xdrawchem
xfce4-equake-plugin
xtb
science/xtb: update to 6.3.3
2020-09-20 21:19:02 +00:00
yoda
science/yoda: Update 1.8.2 -> 1.8.3
2020-07-09 00:50:09 +00:00
Makefile
Remove expired ports:
2020-09-19 13:01:00 +00:00