| .. |
|
2d-rewriter
|
|
|
|
abinit
|
Mark BROKEN: fails to build
|
2020-05-29 08:38:54 +00:00 |
|
afni
|
science/afni: update to 20.1.13
|
2020-06-04 16:49:57 +00:00 |
|
agrum
|
science/agrum: Update 0.17.2 -> 0.17.3
|
2020-05-26 02:54:42 +00:00 |
|
aircraft-datcom
|
|
|
|
ALPSCore
|
- Swap back from net/openmpi3 to net/openmpi
|
2020-04-21 21:26:56 +00:00 |
|
antioch
|
|
|
|
apbs
|
|
|
|
atompaw
|
|
|
|
avogadro2
|
|
|
|
avogadrolibs
|
science/avogadrolibs: Remove a broken option VTK set to default by mistake
|
2020-04-27 16:09:56 +00:00 |
|
bagel
|
|
|
|
bddsolve
|
|
|
|
berkeleygw
|
Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas
|
2020-05-06 16:39:12 +00:00 |
|
bodr
|
|
|
|
brian
|
|
|
|
buddy
|
|
|
|
cdcl
|
|
|
|
cdf
|
|
|
|
cdk
|
|
|
|
cdo
|
Remove ACCEPT_USE_OF_DEPRECATED_PROJ_API_H
|
2020-05-16 10:51:44 +00:00 |
|
cgnslib
|
|
|
|
cgribex
|
Update to 1.9.4
|
2020-05-16 10:51:49 +00:00 |
|
checkmol
|
|
|
|
chemical-mime-data
|
|
|
|
chemps2
|
Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas
|
2020-05-06 16:39:12 +00:00 |
|
chemtool
|
|
|
|
chemtool-devel
|
|
|
|
chrono
|
- Update net/openmpi to 4.0.3 (openmpi 1 is deprecated)
|
2020-04-19 09:49:02 +00:00 |
|
clhep
|
|
|
|
clipper
|
|
|
|
code_saturne
|
Update Sphinx
|
2020-05-11 23:51:58 +00:00 |
|
colt
|
|
|
|
coordgenlibs
|
science/coordgenlibs: Update 1.4.0 -> 1.4.0-6; Fix the missing file templates.mae problem
|
2020-05-10 19:36:07 +00:00 |
|
cp2k
|
Re-add port: science/cp2k: Quantum chemistry and solid state physics software package; Update 6.1.0 -> 7.1.0-20200518
|
2020-05-20 02:27:15 +00:00 |
|
cp2k-data
|
science/cp2k-data: Update 6.1.0 -> 7.1.0
|
2020-05-25 04:00:02 +00:00 |
|
crf++
|
|
|
|
dalton
|
Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas.
|
2020-05-06 16:11:14 +00:00 |
|
datawarrior
|
|
|
|
dcl
|
|
|
|
devisor
|
|
|
|
dftbplus
|
science/dftbplus: Change to python3.
|
2020-05-20 00:36:40 +00:00 |
|
dkh
|
|
|
|
dlib-cpp
|
Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas
|
2020-05-06 16:39:12 +00:00 |
|
dlpoly-classic
|
|
|
|
drawxtl
|
|
|
|
dvc
|
|
|
|
eccodes
|
Mark as BROKEN on powerpc64:
|
2020-05-18 03:05:44 +00:00 |
|
elk
|
|
|
|
elmerfem
|
Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas.
|
2020-05-06 16:11:14 +00:00 |
|
epte
|
|
|
|
erd
|
|
|
|
ergo
|
Some days it does not pay to get out of bed.
|
2020-05-15 04:25:56 +00:00 |
|
erkale
|
- Update math/armadillo to 9.870.2
|
2020-05-06 21:19:22 +00:00 |
|
erkale-pseudopotentials
|
science/erkale-pseudopotentials: Update g20190114 -> g20200426
|
2020-05-07 00:32:03 +00:00 |
|
fastcap
|
|
|
|
fasthenry
|
|
|
|
fastjet
|
science/fastjet: Enable plugins; Fix the config program
|
2020-05-26 17:10:15 +00:00 |
|
fisicalab
|
|
|
|
fleur
|
Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas.
|
2020-05-06 16:11:14 +00:00 |
|
fsom
|
|
|
|
fvcom
|
|
|
|
fvcom-mpi
|
- Update net/openmpi to 4.0.3 (openmpi 1 is deprecated)
|
2020-04-19 09:49:02 +00:00 |
|
gabedit
|
|
|
|
gamess-us
|
Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas.
|
2020-05-06 16:11:14 +00:00 |
|
gchemutils
|
|
|
|
gdma
|
|
|
|
getdp
|
|
|
|
ghemical
|
science/ghemical: Not compatible with the upcoming OpenBabel-3 => disable this internal option
|
2020-05-10 21:40:08 +00:00 |
|
ghmm
|
|
|
|
gnudatalanguage
|
x11-toolkits/wxgtk30: Update to 3.0.5.1
|
2020-05-17 05:55:12 +00:00 |
|
gpaw-setups
|
|
|
|
gramps
|
|
|
|
grib_api
|
|
|
|
gromacs
|
science/gromacs: Fix plist when MPI=on
|
2020-05-05 01:20:18 +00:00 |
|
gsmc
|
|
|
|
gtamsanalyzer
|
|
|
|
h5utils
|
|
|
|
h5z-zfp
|
|
|
|
harminv
|
|
|
|
hdf
|
|
|
|
hdf5
|
|
|
|
hdf5-18
|
|
|
|
healpix
|
|
|
|
hepmc3
|
New port: science/hepmc3: Event record for High Energy Physics Monte Carlo generators/simulation
|
2020-05-26 16:21:23 +00:00 |
|
highfive
|
science/highfiv: Update 2.2 -> 2.2.1
|
2020-04-29 07:05:09 +00:00 |
|
hypre
|
science/hypre: Update 2.18.2 -> 2.19.0
|
2020-05-27 08:08:16 +00:00 |
|
iboview
|
Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas
|
2020-05-06 16:39:12 +00:00 |
|
InsightToolkit
|
|
|
|
isaac-cfd
|
|
|
|
jdftx
|
|
|
|
jmol
|
science/jmol: Update 14.30.2 -> 14.31.0
|
2020-05-28 17:29:56 +00:00 |
|
jstrack
|
|
|
|
kalzium
|
Update KDE's Applications to 20.04.1
|
2020-05-15 16:52:00 +00:00 |
|
kim-api
|
|
|
|
kst2
|
science/kst2: prepare for Qt5-5.15
|
2020-05-18 16:42:25 +00:00 |
|
lammps
|
science/lammps: Update 5May2020 -> 2Jun2020
|
2020-06-02 02:49:07 +00:00 |
|
lamprop
|
|
|
|
latte
|
science/latte: Update 1.2.1 -> 1.2.2
|
2020-05-07 01:02:37 +00:00 |
|
libaec
|
|
|
|
libccp4
|
|
|
|
libcint
|
science/libcint: Update 3.0.19 -> 3.0.20
|
2020-05-15 15:44:22 +00:00 |
|
libctl
|
|
|
|
libefp
|
|
|
|
libgeodecomp
|
|
|
|
libghemical
|
|
|
|
libgridxc
|
Mark BROKEN
|
2020-05-16 10:02:19 +00:00 |
|
libint
|
|
|
|
libint2
|
|
|
|
libkml
|
Convert REINPLACE_CMD to patch files
|
2020-05-08 20:50:41 +00:00 |
|
liblinear
|
|
|
|
libmsym
|
|
|
|
liboglappth
|
|
|
|
libquantum
|
|
|
|
libssm
|
|
|
|
libsvm
|
|
|
|
libsvm-python
|
|
|
|
libvdwxc
|
|
|
|
libxc
|
science/libxc: remove patch
|
2020-05-02 20:20:28 +00:00 |
|
liggghts
|
science/liggghts: Remove the unnecessary VTK_DIR
|
2020-04-27 16:26:42 +00:00 |
|
lm
|
Bump PORTREVISION for devel/protobuf shlib change
|
2020-06-03 18:32:05 +00:00 |
|
luscus
|
|
|
|
madness
|
|
|
|
maeparser
|
|
|
|
massxpert
|
Sanitize COMMENT per Section 5.6 of the FreeBSD Porter's Handbook (part 6).
|
2020-05-28 08:43:29 +00:00 |
|
mbdyn
|
Mark as BROKEN on powerpc64:
|
2020-05-18 01:38:12 +00:00 |
|
mcstas
|
|
|
|
mcstas-comps
|
|
|
|
mcxtrace
|
|
|
|
mcxtrace-comps
|
|
|
|
mdynamix
|
|
|
|
medit
|
|
|
|
metaphysicl
|
|
|
|
minc2
|
|
|
|
mmdb2
|
|
|
|
mmtf-cpp
|
|
|
|
mol2ps
|
|
|
|
molgif
|
|
|
|
molscript
|
|
|
|
molsketch
|
|
|
|
mpb
|
|
|
|
mpqc
|
|
|
|
msms
|
|
|
|
multiwfn
|
Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas.
|
2020-05-06 16:11:14 +00:00 |
|
namd
|
|
|
|
nest
|
|
|
|
netcdf
|
|
|
|
netcdf-cxx
|
|
|
|
netcdf-fortran
|
|
|
|
nifticlib
|
|
|
|
nwchem
|
science/nwchem: Update to 7.0.0-release
|
2020-05-07 07:58:36 +00:00 |
|
nwchem-data
|
science/nwchem-data: Update 6.8.1.20190125 -> 7.0.0
|
2020-05-07 02:54:17 +00:00 |
|
octopus
|
Mark BROKEN
|
2020-05-16 10:03:40 +00:00 |
|
openbabel
|
|
|
|
openkim
|
|
|
|
openkim-models
|
|
|
|
opensim-core
|
Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas
|
2020-05-06 16:39:12 +00:00 |
|
opensph
|
|
|
|
opsin
|
|
|
|
p5-Algorithm-SVMLight
|
|
|
|
p5-Chemistry-3DBuilder
|
|
|
|
p5-Chemistry-Bond-Find
|
|
|
|
p5-Chemistry-Canonicalize
|
|
|
|
p5-Chemistry-Elements
|
|
|
|
p5-Chemistry-File-MDLMol
|
|
|
|
p5-Chemistry-File-Mopac
|
|
|
|
p5-Chemistry-File-PDB
|
|
|
|
p5-Chemistry-File-SLN
|
|
|
|
p5-Chemistry-File-SMARTS
|
|
|
|
p5-Chemistry-File-SMILES
|
|
|
|
p5-Chemistry-File-VRML
|
|
|
|
p5-Chemistry-File-XYZ
|
|
|
|
p5-Chemistry-FormulaPattern
|
|
|
|
p5-Chemistry-InternalCoords
|
|
|
|
p5-Chemistry-Isotope
|
|
|
|
p5-Chemistry-MacroMol
|
|
|
|
p5-Chemistry-MidasPattern
|
|
|
|
p5-Chemistry-Mok
|
|
|
|
p5-Chemistry-Mol
|
|
|
|
p5-Chemistry-Pattern
|
|
|
|
p5-Chemistry-Reaction
|
|
|
|
p5-Chemistry-Ring
|
|
|
|
p5-Geo-BUFR
|
|
|
|
p5-Geo-Coordinates-Converter
|
Add NO_ARCH
|
2020-04-21 19:47:40 +00:00 |
|
p5-Geo-Coordinates-Converter-iArea
|
Cosmetic change
|
2020-04-21 19:37:40 +00:00 |
|
p5-Geo-WebService-Elevation-USGS
|
- Update to 0.117
|
2020-04-18 08:35:03 +00:00 |
|
p5-Mcstas-Tools
|
|
|
|
p5-PerlMol
|
|
|
|
p5-Physics-Unit
|
|
|
|
packmol
|
|
|
|
pagmo2
|
|
|
|
paje
|
|
|
|
paraview
|
Bump PORTREVISION for devel/protobuf shlib change
|
2020-06-03 18:32:05 +00:00 |
|
pcmsolver
|
|
|
|
PETSc
|
|
|
|
plumed
|
science/plumed: Broken on i386
|
2020-05-23 21:59:28 +00:00 |
|
pnetcdf
|
- Update net/openmpi to 4.0.3 (openmpi 1 is deprecated)
|
2020-04-19 09:49:02 +00:00 |
|
pulseview
|
science/pulseview: prepare for Qt5-5.15
|
2020-05-30 10:09:51 +00:00 |
|
py-abipy
|
math/py-seaborn: Update to 0.10.1
|
2020-05-31 21:03:37 +00:00 |
|
py-asdf
|
Update to 2.6.0
|
2020-04-24 18:03:39 +00:00 |
|
py-ase
|
|
|
|
py-avogadrolibs
|
|
|
|
py-cdo
|
|
|
|
py-chainer
|
Bump PORTREVISION for devel/protobuf shlib change
|
2020-06-03 18:32:05 +00:00 |
|
py-chainer-chemistry
|
|
|
|
py-chempy
|
science/py-chempy: Update 0.7.10 -> 0.7.11
|
2020-05-30 07:28:06 +00:00 |
|
py-coards
|
|
|
|
py-DendroPy
|
|
|
|
py-dlib
|
|
|
|
py-eccodes-python
|
|
|
|
py-geolinks
|
|
|
|
py-geomet
|
|
|
|
py-geometer
|
|
|
|
py-gpaw
|
Mark BROKEN
|
2020-05-17 18:33:45 +00:00 |
|
py-GPy
|
|
|
|
py-GPyOpt
|
|
|
|
py-gsd
|
|
|
|
py-h5json
|
|
|
|
py-h5py
|
|
|
|
py-kim-query
|
New port: science/py-kim-query: Helper routines for querying the OpenKIM repository
|
2020-05-03 19:38:33 +00:00 |
|
py-kinematics
|
|
|
|
py-kliff
|
New port: science/py-kliff: KIM-based Learning-Integrated Fitting Framework
|
2020-05-03 20:58:00 +00:00 |
|
py-liac-arff
|
Add py-liac-arff 2.4.0
|
2020-05-16 10:49:37 +00:00 |
|
py-lifelines
|
|
|
|
py-MDAnalysis
|
|
|
|
py-MDAnalysisTests
|
|
|
|
py-mdp
|
|
|
|
py-mlpy
|
|
|
|
py-mmtf-python
|
|
|
|
py-molmod
|
science/py-molmod: Update 1.4.5 -> 1.4.7
|
2020-05-19 00:52:30 +00:00 |
|
py-moltemplate
|
science/py-moltemplate: Update 2.17.7 -> 2.17.8
|
2020-05-29 05:30:36 +00:00 |
|
py-netCDF4
|
|
|
|
py-obspy
|
|
|
|
py-oddt
|
|
|
|
py-OpenFermion
|
|
|
|
py-openpiv
|
|
|
|
py-paida
|
|
|
|
py-paramz
|
|
|
|
py-phono3py
|
Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas
|
2020-05-06 16:39:12 +00:00 |
|
py-phonopy
|
|
|
|
py-pupynere
|
|
|
|
py-pyaixi
|
|
|
|
py-pycsw
|
|
|
|
py-pydicom
|
- Update to 1.4.2
|
2020-04-22 08:01:18 +00:00 |
|
py-PyFR
|
science/py-PyFR: Update 1.9.0 -> 1.10.0
|
2020-05-29 05:48:10 +00:00 |
|
py-pygeodesy
|
|
|
|
py-pygeometa
|
|
|
|
py-pymatgen
|
- Update WWW
|
2020-05-26 09:32:48 +00:00 |
|
py-pymol
|
pymol fails to build with python 2.7
|
2020-05-29 08:42:46 +00:00 |
|
py-pyosf
|
|
|
|
py-PyQuante
|
|
|
|
py-pysal
|
|
|
|
py-pyteomics
|
Add DF, GRAPHICS, TDA, UNIMOD and XML options
|
2020-05-21 20:44:52 +00:00 |
|
py-qcelemental
|
|
|
|
py-qcengine
|
Move sysutils/py-cpuinfo -> sysutils/py-py-cpuinfo to match the PyPI name
|
2020-05-18 18:56:59 +00:00 |
|
py-qspin
|
|
|
|
py-quantities
|
|
|
|
py-rmf
|
|
|
|
py-rmsd
|
|
|
|
py-ruffus
|
|
|
|
py-scikit-fuzzy
|
science/py-scikit-fuzzy: Change to default python3
|
2020-05-21 00:20:33 +00:00 |
|
py-scikit-learn
|
|
|
|
py-scikit-optimize
|
Add PLOTS option
|
2020-04-22 21:28:17 +00:00 |
|
py-scikit-sparse
|
|
|
|
py-scimath
|
|
|
|
py-scipy
|
|
|
|
py-scoria
|
|
|
|
py-SimpleSpectral
|
|
|
|
py-spglib
|
science/py-spglib: Update 1.14.1 -> 1.15.1
|
2020-05-30 09:17:34 +00:00 |
|
py-tensorflow
|
Bump PORTREVISION for devel/protobuf shlib change
|
2020-06-03 18:32:05 +00:00 |
|
py-veusz
|
|
|
|
py-ws2300
|
|
|
|
pybrain
|
Sanitize COMMENT per Section 5.6 of the FreeBSD Porter's Handbook (part 4).
|
2020-05-27 15:31:55 +00:00 |
|
pynn
|
|
|
|
qbox
|
science/qbox: Update 1.71.0 -> 1.71.1
|
2020-05-22 08:42:19 +00:00 |
|
qcl
|
|
|
|
qiskit-aer
|
science/qiskit-aer: Update 0.5.1 -> 0.5.2
|
2020-06-06 04:41:55 +00:00 |
|
qmcpack
|
Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas.
|
2020-05-06 16:11:14 +00:00 |
|
quantum-espresso
|
|
|
|
quantum-espresso-pseudopotentials
|
|
|
|
qwalk
|
|
|
|
R-cran-AMORE
|
math/R: Update to version 4.0.0
|
2020-05-05 16:07:53 +00:00 |
|
R-cran-bayesm
|
math/R: Update to version 4.0.0
|
2020-05-05 16:07:53 +00:00 |
|
R-cran-cmprsk
|
math/R: Update to version 4.0.0
|
2020-05-05 16:07:53 +00:00 |
|
R-cran-DCluster
|
math/R: Update to version 4.0.0
|
2020-05-05 16:07:53 +00:00 |
|
R-cran-e1071
|
math/R: Update to version 4.0.0
|
2020-05-05 16:07:53 +00:00 |
|
R-cran-eco
|
math/R: Update to version 4.0.0
|
2020-05-05 16:07:53 +00:00 |
|
R-cran-Epi
|
math/R: Update to version 4.0.0
|
2020-05-05 16:07:53 +00:00 |
|
R-cran-epicalc
|
math/R: Update to version 4.0.0
|
2020-05-05 16:07:53 +00:00 |
|
R-cran-etm
|
math/R: Update to version 4.0.0
|
2020-05-05 16:07:53 +00:00 |
|
R-cran-FAdist
|
math/R: Update to version 4.0.0
|
2020-05-05 16:07:53 +00:00 |
|
R-cran-fastICA
|
math/R: Update to version 4.0.0
|
2020-05-05 16:07:53 +00:00 |
|
R-cran-kernlab
|
math/R: Update to version 4.0.0
|
2020-05-05 16:07:53 +00:00 |
|
R-cran-snow
|
math/R: Update to version 4.0.0
|
2020-05-05 16:07:53 +00:00 |
|
R-cran-som
|
math/R: Update to version 4.0.0
|
2020-05-05 16:07:53 +00:00 |
|
R-cran-udunits2
|
math/R: Update to version 4.0.0
|
2020-05-05 16:07:53 +00:00 |
|
rdkit
|
|
|
|
rmf
|
|
|
|
rubygem-ai4r
|
|
|
|
rubygem-cdo
|
Update to 1.5.1
|
2020-05-16 11:04:45 +00:00 |
|
rubygem-rgeo
|
|
|
|
rubygem-rgeo-geojson
|
|
|
|
rubygem-rgeo-proj4
|
|
|
|
rubygem-rgeo-shapefile
|
|
|
|
rubygem-ruby-dcl
|
|
|
|
rubygem-ruby-netcdf
|
|
|
|
scidavis
|
science/scidavis:
|
2020-05-27 20:10:56 +00:00 |
|
siesta
|
|
|
|
sigrok-cli
|
|
|
|
sigrok-firmware
|
|
|
|
sigrok-firmware-fx2lafw
|
|
|
|
sigrok-firmware-utils
|
|
|
|
silo
|
|
|
|
simbody
|
Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas
|
2020-05-06 16:39:12 +00:00 |
|
simgrid
|
science/simgrid: Update 3.24 -> 3.25
|
2020-05-30 06:16:04 +00:00 |
|
simint
|
|
|
|
simlib
|
|
|
|
simsmith
|
Sanitize COMMENT per Section 5.6 of the FreeBSD Porter's Handbook (part 6).
|
2020-05-28 08:43:29 +00:00 |
|
smoldyn
|
|
|
|
sparta
|
- Update net/openmpi to 4.0.3 (openmpi 1 is deprecated)
|
2020-04-19 09:49:02 +00:00 |
|
spglib
|
science/spglib: Update 1.12.2 -> 1.15.1
|
2020-05-30 05:58:05 +00:00 |
|
step
|
Update KDE's Applications to 20.04.1
|
2020-05-15 16:52:00 +00:00 |
|
svmlight
|
|
|
|
szip
|
|
|
|
teem
|
|
|
|
tfel
|
|
|
|
tinker
|
|
|
|
udunits
|
|
|
|
v_sim
|
|
|
|
vipster
|
science/vipster: Update 1.18b-174 -> 1.18b.20200514 (to the current revision)
|
2020-05-15 03:46:25 +00:00 |
|
vmd
|
|
|
|
voro++
|
|
|
|
votca
|
Add compiler:c++14-lang to USES to fix build on GCC-based systems:
|
2020-05-06 12:04:05 +00:00 |
|
wannier90
|
|
|
|
wwplot
|
|
|
|
wxmacmolplt
|
x11-toolkits/wxgtk30: Update to 3.0.5.1
|
2020-05-17 05:55:12 +00:00 |
|
xcrysden
|
science/xcrysden: Update 1.5.60 -> 1.6.2
|
2020-05-16 20:16:48 +00:00 |
|
xdrawchem
|
|
|
|
xfce4-equake-plugin
|
|
|
|
xtb
|
new port: science/xtb
|
2020-05-28 22:05:42 +00:00 |
|
yoda
|
science/yoda: Update 1.8.0 -> 1.8.2
|
2020-05-26 08:52:41 +00:00 |
|
Makefile
|
Clean up some things
|
2020-05-30 00:57:02 +00:00 |
