Mark Linimon f702234ea2 vec_splats function is not supported by base GCC. Add USES=compiler:c11 ... to fix build on powerpc platforms. PR: 235514 Submitted by: Piotr Kubaj Approved by: portmgr (tier-2 blanket)		2019-02-18 01:30:24 +00:00
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artemis
avida
babel
bamtools
bcftools
bedtools
biococoa	Move Objective-C ports to the v2 GNUstep ABI.	2019-02-03 15:37:58 +00:00
bowtie
bowtie2
bwa
canu
cd-hit
cdbfasta
checkm	biology/checkm: Update 1.0.12 -> 1.0.13	2019-02-09 22:58:09 +00:00
chemeq
clustal-omega
clustalw
clustalx
consed
cytoscape
ddocent
diamond
dsr-pdb	biology/dsr-pdb: Correct typo	2019-02-05 19:01:59 +00:00
emboss
exonerate
fasta
fasta3
fastahack
fastdnaml
fastool
fastqc
fasttree
fastx-toolkit
figtree	New port: biology/figtree: Graphical viewer of phylogenetic trees	2019-02-03 21:14:38 +00:00
fluctuate
freebayes
garlic
gatk
gff2ps
gmap
gperiodic
graphlan	New port: biology/graphlan: High-quality circular representations of taxonomic, phylogenetic trees	2019-02-03 20:13:26 +00:00
grappa
groopm
hisat2
hmmer	vec_splats function is not supported by base GCC. Add USES=compiler:c11	2019-02-18 01:30:24 +00:00
htslib
hyphy
igv
infernal
iolib
iqtree
jalview
jellyfish
kallisto
lagan
lamarc
libgtextutils
libsbml
linux-foldingathome
mafft
mapm3
migrate
molden
mopac
mrbayes
mummer
muscle
ncbi-blast+	Update dns/libidn2 to 2.1.1	2019-02-09 23:25:36 +00:00
ncbi-cxx-toolkit
ncbi-toolkit	Update dns/libidn2 to 2.1.1	2019-02-09 23:25:36 +00:00
ngs-sdk
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Coordinate
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-FeatureIO
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-BioPerl
p5-BioPerl-Run
p5-transdecoder
p5-TrimGalore
paml
pbbam
pbcopper
pbseqan	biology/pbseqan: Minor upgrade to latest commit	2019-02-17 19:31:24 +00:00
pear-merger
phrap
phred
phylip
phyml
plinkseq
primer3
prodigal	New port: biology/prodigal: Protein-coding gene prediction for prokaryotic genomes	2019-02-03 18:08:14 +00:00
prodigy-lig	New port: biology/prodigy-lig: Prediction of protein-small molecule binding affinities	2019-02-03 18:49:23 +00:00
protomol
psi88
py-biom-format
py-biopython
py-bx-python
py-cutadapt
py-fastTSNE
py-Genesis-PyAPI
py-gffutils
py-gtfparse
py-loompy
py-macs2
py-orange3-bioinformatics
py-orange3-single-cell
py-pyfaidx
py-pysam
pycogent
pyfasta	- Update WWW	2019-02-07 09:30:40 +00:00
python-nexus
rainbow
recombine
ruby-bio
rubygem-bio
samtools
seaview
seqan
seqan1
seqan-apps
seqio
seqtk
seqtools
sim4
slclust
smithwaterman
stacks
stringtie
t_coffee
tabixpp
treepuzzle
trimadap
trimmomatic
tRNAscan-SE
ugene
unanimity
vcflib
vcftools
velvet
wise
Makefile	New port: biology/figtree: Graphical viewer of phylogenetic trees	2019-02-03 21:14:38 +00:00