Yuri Victorovich 654d6ceba9 New port: science/simbody: Multibody dynamics library for (bio)mechanical systems simulation		2018-11-15 06:40:50 +00:00
..
2d-rewriter
abinit
afni
aircraft-datcom
ALPSCore	Remove compatibility code for FreeBSD < 11.2 from all ports.	2018-11-02 13:32:34 +00:00
antioch	science/metaphysicl: Update 0.3.1 -> 0.3.2	2018-11-15 02:02:14 +00:00
atom	science/libxc: Update 3.0.0 -> 4.2.3	2018-10-20 23:29:28 +00:00
atompaw
avogadro	science/avogadro: Add CONFLICTS statement	2018-10-24 06:03:32 +00:00
avogadro2	science/avogadrolibs: Update 1.91.0 -> 1.91.0-107	2018-10-18 22:31:26 +00:00
avogadrolibs	science/avogadrolibs: Update 1.91.0-107 -> 1.92.0	2018-11-09 06:25:39 +00:00
bagel	Drop remaining BROKEN_FreeBSD_10 per EOL after r483807	2018-11-05 06:54:31 +00:00
bddsolve
bodr
brian
buddy
cdcl
cdf
cdo
cgnslib	science/cgnslib: Update to 3.3.1 and modernize	2018-10-18 00:27:01 +00:00
cgribex
checkmol
chemical-mime-data
chemps2	science/chemps2: Update 1.8.8 -> 1.8.9	2018-10-30 06:00:05 +00:00
chemtool	science/chemtool: fix build with GCC-based architectures	2018-10-20 16:21:13 +00:00
chemtool-devel
chrono
clhep	Remove compatibility code for FreeBSD < 11.2 from all ports.	2018-11-02 13:32:34 +00:00
clipper
code_saturne	On i386, OpenMP seems incompatible with libatomic.	2018-11-08 17:26:50 +00:00
colt
coordgenlibs	New port: science/coordgenlibs: Schrodinger-developed 2D coordinate generation	2018-10-25 07:36:58 +00:00
coot
cp2k
crf++
dalton	science/dalton: Fix build with GCC8	2018-11-04 18:15:36 +00:00
datawarrior
dcl
devisor
dft_tools
dftbplus
dkh
dlib-cpp
dlpoly-classic
eccodes
elk
epte
erd
erkale	- Update math/armadillo to 9.200.4	2018-11-11 13:32:31 +00:00
esys-particle	New port: science/esys-particle: Particle-based numerical modelling software	2018-11-05 05:16:35 +00:00
fastcap
fasthenry
fisicalab
fleur
fsom
fvcom
fvcom-mpi
gabedit
gamess-us	science/gamess-us: Cosmetic change: internal version number change to 00 for convenence because it is a default	2018-10-15 06:12:03 +00:00
gchemutils
gdma
getdp	- Update to 3.0.3.	2018-10-24 14:36:09 +00:00
ghemical
ghmm
gnudatalanguage
gpaw-setups	New port: science/gpaw-setups: Setups (data files) for py-gpaw, the DFT quantum chemistry software	2018-10-30 04:36:22 +00:00
gramps
grib_api
gromacs	science/gromacs: Update 2018.3 -> 2018.4	2018-11-15 02:22:10 +00:00
gsmc
gtamsanalyzer
gwyddion
h5utils
harminv
hdf
hdf5
hdf5-18	Upgrade science/hdf5-18 to 1.8.21.	2018-11-08 20:55:13 +00:00
hypre	science/hypre: Update 2.15.0 -> 2.15.1	2018-10-20 15:47:07 +00:00
iboview
InsightToolkit	- Take maintainership of devel/gdcm.	2018-11-12 20:47:18 +00:00
isaac-cfd
jdftx	science/libxc: Update 3.0.0 -> 4.2.3	2018-10-20 23:29:28 +00:00
jstrack
kalzium	science/kalzium: switch to depend on science/avogadrolibs	2018-11-09 20:51:21 +00:00
kalzium-kde4	science/kalzium-kde4: Fix build	2018-10-28 02:37:33 +00:00
kst2
lammps	science/lammps: BROKEN on i386	2018-11-12 08:41:11 +00:00
lamprop
latte	New port: science/latte: Quantum chemistry: Density functional tight binding molecular dynamics	2018-10-31 23:05:37 +00:00
libaec
libccp4
libcint
libctl
libefp
libgeodecomp
libghemical
libgridxc	science/libgridxc: Update 0.8.0 -> 0.8.3	2018-11-15 02:56:34 +00:00
libint
libint2	Remove compatibility code for FreeBSD < 11.2 from all ports.	2018-11-02 13:32:34 +00:00
libkml
liblinear
libmsym	New port: science/libmsym: Molecular point group symmetry library	2018-10-16 22:58:17 +00:00
liboglappth
libquantum
libssm
libsvm	- Update pkg-descr	2018-10-13 14:26:24 +00:00
libsvm-python
libxc	Change to my FreeBSD mailing address for two remaining ports.	2018-11-15 01:33:52 +00:00
liggghts	science/liggghts: Set VTK_DIR to prevent conflicts with other vtk versions	2018-11-04 10:25:39 +00:00
linsmith
lm
luscus	Sscience/luscus: Update 0.8.5 -> 0.8.6	2018-10-18 07:30:25 +00:00
madness	science/libxc: Update 3.0.0 -> 4.2.3	2018-10-20 23:29:28 +00:00
maeparser	New port: science/maeparser: Parser for Schrodinger Maestro files	2018-10-25 07:24:36 +00:00
massxpert
mbdyn
mcstas
mcstas-comps
mcxtrace
mcxtrace-comps
mdynamix
medit
meep
metaf2xml
metaphysicl	science/metaphysicl: Update 0.3.1 -> 0.3.2	2018-11-15 02:02:14 +00:00
minc2
mmdb2
mmtf	New port: science/mmtf: C++ implementation of the MMTF API, decoder and encoder	2018-10-18 21:21:17 +00:00
mol2ps
molgif
molsketch	New port: science/molsketch: 2D molecule editor	2018-10-24 05:36:11 +00:00
MOOSE-neural-simulator
mpb
mpqc
msms
multiwfn
namd
netcdf
netcdf-cxx
netcdf-fortran
nifticlib
nwchem	science/nwchem: Fix build on 32-bit systems	2018-11-10 08:01:15 +00:00
octopus	science/libxc: Update 3.0.0 -> 4.2.3	2018-10-20 23:29:28 +00:00
openbabel
openkim
openmx
openstructure
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit
paje
paraview
pcmsolver
PETSc	science/PETSc: Update 3.10.1 -> 3.10.2	2018-10-20 16:08:58 +00:00
pnetcdf
psychopy
pulseview	science/pulseview: Update to version 0.4.1	2018-11-03 13:53:29 +00:00
py-abipy
py-ase	science/py-ase: Update 3.16.2 -> 3.17.0	2018-11-15 01:16:19 +00:00
py-avogadrolibs	New port: science/py-avogadrolibs: Python bindings for Avogadro2 chemistry libraries	2018-10-21 17:52:35 +00:00
py-cdo
py-chempy	science/py-chempy: Update 0.7.5 -> 0.7.6	2018-10-29 04:31:09 +00:00
py-coards
py-DendroPy	Fix packaging with python 3.x	2018-10-12 14:58:58 +00:00
py-dlib
py-gpaw	science/py-gpaw: Add pkg-message; Add LICENSE_FILE; Change /usr/local to LOCALBASE	2018-10-30 04:38:26 +00:00
py-gsd
py-h5py
py-hcluster
py-kinematics
py-lifelines	Survival analysis in Python, including Kaplan Meier, Nelson Aalen and regression	2018-11-13 18:35:02 +00:00
py-MDAnalysis	science/py-MDAnalysis: Update 0.19.0 -> 0.19.2	2018-11-11 22:33:50 +00:00
py-MDAnalysisTests	science/py-MDAnalysisTests/: Update 0.19.0 -> 0.19.2	2018-11-11 22:34:29 +00:00
py-mdp
py-mlpy
py-mmtf-python
py-molmod
py-netCDF4
py-obspy
py-OpenFermion
py-openpiv
py-paida
py-phono3py
py-phonopy	science/py-phonopy: Fix tests	2018-10-17 07:04:50 +00:00
py-pupynere
py-pyaixi
py-pydicom
py-PyFR	math/libxsmm: Update 1.9 -> 1.10	2018-11-15 04:23:38 +00:00
py-pymatgen
py-pymol
py-pyosf
py-PyQuante
py-pysal
py-pyteomics
py-pyteomics.biolccc
py-qspin
py-quantities
py-rmf
py-ScientificPython
py-scikit-fuzzy	science/py-scikit-fuzzy: Update 0.3.1 -> 0.4.0	2018-10-19 04:43:52 +00:00
py-scikit-learn	- Add LICENSE	2018-10-30 09:00:15 +00:00
py-scikit-sparse	science/py-scikit-sparse: Update 0.4.3 -> 0.4.4	2018-11-11 22:39:13 +00:00
py-scimath
py-scipy
py-scoria
py-SimpleSpectral
py-spglib
py-veusz
py-ws2300
pybrain
pycdf
pynn
qbox
qcl
qmcpack	Remove compatibility code for FreeBSD < 11.2 from all ports.	2018-11-02 13:32:34 +00:00
qtresistors
quantum-espresso
qwalk
R-cran-AMORE
R-cran-bayesm
R-cran-cmprsk
R-cran-DCluster
R-cran-e1071
R-cran-eco
R-cran-Epi
R-cran-epicalc
R-cran-etm
R-cran-fastICA
R-cran-kernlab
R-cran-snow
R-cran-som
R-cran-udunits2
rdkit	science/rdkit: Update 2018_03_4 -> 2018_09_1	2018-10-25 07:00:51 +00:00
rmf
rubygem-ai4r
rubygem-cdo
rubygem-rgeo	Update to 1.1.2	2018-10-11 23:45:49 +00:00
rubygem-rgeo-geojson
rubygem-rgeo-proj4
rubygem-rgeo-shapefile
rubygem-ruby-dcl
rubygem-ruby-netcdf
siesta
sigrok-cli	science/sigrok-cli: Update to version 0.7.1	2018-11-03 12:53:26 +00:00
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo
simbody	New port: science/simbody: Multibody dynamics library for (bio)mechanical systems simulation	2018-11-15 06:40:50 +00:00
simint	science/simint: Update 0.7 -> 0.8	2018-10-11 03:21:01 +00:00
simlib	Remove compatibility code for FreeBSD < 11.2 from all ports.	2018-11-02 13:32:34 +00:00
simsmith
sparta	New port: science/sparta: Gas simulator: SPARTA DSMC software package	2018-11-12 03:02:28 +00:00
spglib	science/spglib: Update 1.10.4 -> 1.11.1	2018-11-15 01:27:46 +00:00
step	Update KDE Applications to 18.09.3	2018-11-09 20:09:13 +00:00
step-kde4
svmlight
szip
teem
tfel
tinker
triqs	Remove compatibility code for FreeBSD < 11.2 from all ports.	2018-11-02 13:32:34 +00:00
udunits	Install texinfo files (GNU info) into ${PREFIX}/share/info	2018-11-10 18:12:57 +00:00
v_sim
vmd
voro++	science/voro++: Add shared library	2018-11-04 15:52:42 +00:00
wannier90
wxmacmolplt	New port: science/wxmacmolplt: Graphical user interface principally for the GAMESS program	2018-10-14 23:15:09 +00:00
xcrysden	Update ImageMagick to 6.9.10.14 [1]	2018-11-10 19:57:07 +00:00
xdrawchem
xfce4-equake-plugin
xmakemol
Makefile	New port: science/simbody: Multibody dynamics library for (bio)mechanical systems simulation	2018-11-15 06:40:50 +00:00