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freebsd-ports/science
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Gabor Pali 80bc5be124 This is a collection of Haskell data structures and algorithms useful for 
building bioinformatics-related tools and utilities.
Current list of features includes: a Sequence data type supporting
protein and nucleotide sequences and conversion between them.

WWW: http://blog.malde.org/index.php/the-haskell-bioinformatics-library/

PR:		ports/142187
Submitted by:	Jacula Modyun <jacula(at)gmail.com>
2010-01-03 05:02:13 +00:00
..
2d-rewriter Convert most of remaining ports that depend on xorg-libraries to 2009-06-09 15:33:28 +00:00
2dhf - Change sed delimiters away from , 2009-10-04 20:26:01 +00:00
abinit Chase math/gsl update, 2009-12-01 20:33:45 +00:00
afni Update maintainer's email address. Had already been done for his 2009-06-19 20:06:31 +00:00
at Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now 2009-09-13 00:08:01 +00:00
avogadro - Update to 1.0.0 2009-11-19 21:10:39 +00:00
bblimage
bft
bodr - Switch SourceForge ports to the new File Release System: categories starting with P,R,S 2009-08-22 00:35:32 +00:00
brian - Update to 1.1.3 2009-10-14 07:14:42 +00:00
buddy - Switch SourceForge ports to the new File Release System: categories starting with P,R,S 2009-08-22 00:35:32 +00:00
cdcl - Mark MAKE_JOBS_UNSAFE 2009-11-18 22:39:55 +00:00
cdf - Mark MAKE_JOBS_UNSAFE 2009-11-18 22:39:55 +00:00
cdo - Chase graphics/proj shlib bump 2009-11-27 23:17:38 +00:00
cgnslib Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now 2009-09-13 00:08:01 +00:00
checkmol Checkmol is a command-line utility program which reads molecular 2009-09-19 09:53:55 +00:00
chemical-mime-data - Switch SourceForge ports to the new File Release System: categories starting with P,R,S 2009-08-22 00:35:32 +00:00
chemtool - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
chemtool-devel - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
clhep - Update to 2.0.4.3 2009-09-30 18:48:13 +00:00
colt
crf++ - Switch SourceForge ports to the new File Release System: categories starting with P,R,S 2009-08-22 00:35:32 +00:00
dcl Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now 2009-09-13 00:08:01 +00:00
devisor
dtiquery - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
ecs - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
elmer-eio - Update my mail address to FreeBSD 2009-11-27 22:52:30 +00:00
elmer-fem - Update my mail address to FreeBSD 2009-11-27 22:52:30 +00:00
elmer-hutiter - Update my mail address to FreeBSD 2009-11-27 22:52:30 +00:00
elmer-matc - Update my mail address to FreeBSD 2009-11-27 22:52:30 +00:00
elmer-meshgen2d - Update my mail address to FreeBSD 2009-11-27 22:52:30 +00:00
elmergrid - Update my mail address to FreeBSD 2009-11-27 22:52:30 +00:00
elmerpost - Update my mail address to FreeBSD 2009-11-27 22:52:30 +00:00
euler - Switch SourceForge ports to the new File Release System: categories starting with P,R,S 2009-08-22 00:35:32 +00:00
fastcap
fasthenry
felt - Switch SourceForge ports to the new File Release System: categories starting with P,R,S 2009-08-22 00:35:32 +00:00
flounder - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
fvm - Chase relocation of net/mpich2 2009-11-28 10:44:56 +00:00
g3data - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
gamess Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now 2009-09-13 00:08:01 +00:00
gave - Fix for new ruby-gettext 2009-03-25 12:05:43 +00:00
gchemutils Chase the gchemutils update. 2009-12-18 06:39:57 +00:00
gdis - Switch SourceForge ports to the new File Release System: categories starting with P,R,S 2009-08-22 00:35:32 +00:00
gerris - Switch SourceForge ports to the new File Release System: categories starting with P,R,S 2009-08-22 00:35:32 +00:00
getdp Chase math/gsl update, 2009-12-01 20:33:45 +00:00
ghemical Update to 2.99.2. 2009-11-05 09:54:55 +00:00
ghmm - Switch SourceForge ports to the new File Release System: categories starting with P,R,S 2009-08-22 00:35:32 +00:00
gnudatalanguage Upgrade to 0.9rc3. 2009-12-29 13:43:25 +00:00
gramps - Update to 3.1.3 2009-12-28 06:54:49 +00:00
gromacs - Update to 4.0.7 2009-12-13 00:21:04 +00:00
gsmc - Update to latest 1.1 version 2009-08-15 19:23:49 +00:00
gsystem - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
gtamsanalyzer - Switch SourceForge ports to the new File Release System: categories starting with P,R,S 2009-08-22 00:35:32 +00:00
gwyddion - Retire MASTER_SITE_SOURCEFORGE_EXTENDED, it's no longer needed - all mirrors actually have all distfiles 2009-09-02 15:01:56 +00:00
harminv Harminv is a free program (and accompanying library) to solve the problem 2010-01-02 02:54:00 +00:00
hdf Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now 2009-09-13 00:08:01 +00:00
hdf5 - Add CONFLICTS with science/hdf5-18 2009-12-10 19:15:13 +00:00
hdf5-18 Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now 2009-09-13 00:08:01 +00:00
hs-bio This is a collection of Haskell data structures and algorithms useful for 2010-01-03 05:02:13 +00:00
ics
InsightToolkit - Switch SourceForge ports to the new File Release System: categories starting with P,R,S 2009-08-22 00:35:32 +00:00
isaac-cfd Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now 2009-09-13 00:08:01 +00:00
jmol - Update to 11.8.7 2009-10-09 13:07:57 +00:00
kmovisto - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
kst Chase math/gsl update, 2009-12-01 20:33:45 +00:00
kst2 Chase math/gsl update, 2009-12-01 20:33:45 +00:00
lamprop - Allow to build with MAKE_JOBS_SAFE 2009-03-31 07:52:12 +00:00
libctl Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now 2009-09-13 00:08:01 +00:00
libghemical remove unnecessary file. 2009-11-06 02:04:53 +00:00
libint
libkml libkml is a library for use with applications that want to 2009-10-07 11:10:21 +00:00
liblinear - Update to 1.5 2009-10-29 11:09:53 +00:00
liboglappth
libquantum libquantum is a C library for the simulation of quantum 2009-08-14 20:02:07 +00:00
libsvm - Update to 2.9 2009-11-03 06:07:36 +00:00
libsvm-python
linsmith - Switch SourceForge ports to the new File Release System: categories starting with P,R,S 2009-08-22 00:35:32 +00:00
mayavi - Switch SourceForge ports to the new File Release System: categories starting with P,R,S 2009-08-22 00:35:32 +00:00
mbdyn - Chase relocation of net/mpich2 2009-11-28 10:44:56 +00:00
mcstas Chase math/gsl update, 2009-12-01 20:33:45 +00:00
medit
minc -Repocopy devel/libtool15 -> libtool22 and libltdl15 -> libltdl22. 2009-08-02 19:36:34 +00:00
minc2 -Repocopy devel/libtool15 -> libtool22 and libltdl15 -> libltdl22. 2009-08-02 19:36:34 +00:00
mol2ps mol2ps is a freely available command-line utility program which reads 2009-09-19 11:02:46 +00:00
mpb Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now 2009-09-13 00:08:01 +00:00
mpqc - Chase relocation of net/mpich2 2009-11-28 10:44:56 +00:00
mpqc-mpich
ncs - Chase relocation of net/mpich2 2009-11-28 10:44:56 +00:00
netcdf - Update WWW 2009-09-16 08:11:37 +00:00
netcdf4 - Move pkgconfig config to libdata, just like others do 2009-09-27 03:05:25 +00:00
netcdf-ftn
nifticlib - Switch SourceForge ports to the new File Release System: categories starting with P,R,S 2009-08-22 00:35:32 +00:00
oases Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now 2009-09-13 00:08:01 +00:00
omnetpp - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
openbabel Builds on ia64. 2009-11-11 16:12:14 +00:00
ovt - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
p5-Algorithm-SVMLight - Update to 0.09 2009-06-05 22:56:07 +00:00
p5-Chemistry-Elements - lang/perl5.6 is dead, remove PERL_LEVEL/PERL_VERSION < 500801 checks 2009-07-22 16:27:08 +00:00
p5-Chemistry-File-PDB p5-Chemistry-File-PDB reads and writes PDB files. The PDB file format 2009-05-17 12:51:49 +00:00
p5-Chemistry-MacroMol Chemistry-MacroMol is a toolkit includes basic objects and methods to 2009-05-17 13:00:50 +00:00
p5-Chemistry-Mol Chemistr-Mol is a toolkit includes basic objects and methods to 2009-05-16 23:29:15 +00:00
p5-Geo-ReadGRIB - Update to 1.21 2009-11-22 03:15:14 +00:00
paje
paraview For ports maintained by ports@FreeBSD.org, remove names and/or 2009-12-21 02:19:12 +00:00
pcp - Switch SourceForge ports to the new File Release System: categories starting with P,R,S 2009-08-22 00:35:32 +00:00
peekabot Reset maintainer at his request. 2009-12-15 19:48:26 +00:00
pnetcdf - Chase relocation of net/mpich2 2009-11-28 10:44:56 +00:00
psi3 Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now 2009-09-13 00:08:01 +00:00
psychopy - Update to 1.51.01 2009-11-11 03:05:43 +00:00
py-h5py - Update to 1.2.1 2009-09-24 12:49:40 +00:00
py-hcluster - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
py-mdp - Switch SourceForge ports to the new File Release System: categories starting with P,R,S 2009-08-22 00:35:32 +00:00
py-mlpy Chase math/gsl update, 2009-12-01 20:33:45 +00:00
py-netCDF4 - Update science/netcdf4 to 4.0.1 2009-09-26 15:11:38 +00:00
py-openbabel Update to 2.2.2 2009-08-10 17:14:49 +00:00
py-paida - Get rip python 2.3+ 2009-12-13 17:00:14 +00:00
py-pydicom
py-scipy - Update to 0.7.1 2009-09-19 13:34:45 +00:00
pybrain PyBrain is a modular Machine Learning Library for Python. 2009-11-19 13:44:38 +00:00
pycdf - Switch SourceForge ports to the new File Release System: categories starting with P,R,S 2009-08-22 00:35:32 +00:00
pyvox
qcl
ruby-dcl - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
ruby-gphys
ruby-netcdf - Assign all unmaintained ruby ports to ruby@, 2009-06-16 15:53:25 +00:00
silo Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now 2009-09-13 00:08:01 +00:00
simlib - update to 3.0.20081216 from 3.0.20071212 2009-07-06 14:56:42 +00:00
svmlight - Update to 6.02 2009-04-11 20:37:01 +00:00
szip -Repocopy devel/libtool15 -> libtool22 and libltdl15 -> libltdl22. 2009-08-02 19:36:34 +00:00
udunits - Update to 2.1.9 2009-10-28 13:24:46 +00:00
v_sim Fix plist when NOPORTDOCS / NOPORTEXAMPLES are defined. 2009-11-07 14:36:46 +00:00
vis5d+ Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now 2009-09-13 00:08:01 +00:00
vmd - bump all port that indirectly depends on libjpeg and have not yet been bumped or updated 2009-07-31 13:57:52 +00:00
x11iraf
xloops-ginac This port has been broken for 3+ months, thus 2009-12-08 14:30:09 +00:00
xmakemol For ports maintained by ports@FreeBSD.org, remove names and/or 2009-12-21 02:19:12 +00:00
xmds - Switch SourceForge ports to the new File Release System: categories starting with P,R,S 2009-08-22 00:35:32 +00:00
Makefile This is a collection of Haskell data structures and algorithms useful for 2010-01-03 05:02:13 +00:00