42 lines
1000 B
Makefile
42 lines
1000 B
Makefile
PORTNAME= haplohseq
|
|
DISTVERSION= 0.1.2
|
|
PORTREVISION= 5
|
|
CATEGORIES= biology
|
|
|
|
MAINTAINER= jwb@FreeBSD.org
|
|
COMMENT= Identify regions of allelic imbalance
|
|
|
|
LICENSE= MIT
|
|
|
|
LIB_DEPENDS= libboost_system.so:devel/boost-libs
|
|
RUN_DEPENDS= R-cran-optparse>0:devel/R-cran-optparse
|
|
|
|
USES= compiler:c++11-lang gmake localbase:ldflags python:3.6+
|
|
USE_GITHUB= yes
|
|
|
|
GH_ACCOUNT= outpaddling
|
|
|
|
OPTIONS_DEFINE= EXAMPLES
|
|
|
|
MAKEFILE= makefile
|
|
LDFLAGS+= -lpthread
|
|
MAKE_ENV= STRIP=${STRIP}
|
|
|
|
SUB_FILES= haplohseq-example
|
|
|
|
pre-configure:
|
|
@${REINPLACE_CMD} \
|
|
-e 's|/bin/bash|/bin/sh|' \
|
|
-e 's|python|mkdir example_output; ${PYTHON_CMD}|' \
|
|
-e 's|\.\./haplohseq|haplohseq|' \
|
|
${WRKSRC}/example/example_run.sh
|
|
|
|
post-install-EXAMPLES-on:
|
|
${INSTALL_SCRIPT} ${WRKDIR}/haplohseq-example ${STAGEDIR}${PREFIX}/bin
|
|
(cd ${WRKSRC} && ${RM} example/*.orig scripts/*.orig && ${COPYTREE_SHARE} "example ldmap scripts" ${STAGEDIR}${EXAMPLESDIR})
|
|
|
|
do-test:
|
|
@(cd ${WRKSRC}/build/test && ${FILESDIR}/run-tests)
|
|
|
|
.include <bsd.port.mk>
|