freebsd-ports/science
Yuri Victorovich 29e192ad3f MFH: r555008
science/agrum: Update 0.18.1 -> 0.18.2

Changelog: https://gitlab.com/agrumery/aGrUM/-/blob/master/CHANGELOG.md

Approved by:	ports-secteam (Riggs)
2020-11-15 05:32:37 +00:00
..
2d-rewriter
abinit
afni science/afni: update to 20.2.19 2020-09-30 11:11:44 +00:00
agrum MFH: r555008 2020-11-15 05:32:37 +00:00
aircraft-datcom
ALPSCore
antioch
apbs science/apbs: fix build on current 2020-08-27 18:37:59 +00:00
atompaw
avogadro2
avogadrolibs
bagel
bddsolve
berkeleygw
bodr
buddy
cdcl science/cdcl: fix build on recent current 2020-08-28 16:09:15 +00:00
cdf
cdk
cdo
cgnslib Upgrade to v4.1.2 and add a test target. 2020-09-13 09:26:10 +00:00
cgribex
checkmol
chemical-mime-data
chemps2
chemtool science/chemtool: Fix build on 13 by adding -fcommon 2020-09-20 23:32:51 +00:00
chemtool-devel
chrono
clhep
clipper
code_saturne Upgrade to v6.1.2 (6.2.0 is still an intermediate release). 2020-09-13 19:31:29 +00:00
colt
coordgenlibs
cp2k
cp2k-data
crf++ Clean up some things 2020-09-24 08:50:25 +00:00
dalton
datawarrior Deprecate ports broken for more than 6 months 2020-07-26 07:32:00 +00:00
dcl
devisor
dftbplus
dkh
dlib-cpp science/dlib-cpp and science/py-dlib: Update to 19.21. 2020-08-20 09:50:18 +00:00
dlpoly-classic
drawxtl
dvc Fix build post-r547793. 2020-09-09 15:24:00 +00:00
eccodes Use local patch file instead of PATCHFILES 2020-09-19 15:35:11 +00:00
elk
elmerfem science/elmerfem: Update to 8.4.20200708 and fix dependencies 2020-07-31 09:49:03 +00:00
epte science/epte: fix build on recent current 2020-08-28 20:59:08 +00:00
erd
ergo
erkale - Update math/armadillo to 9.900.2 2020-08-10 13:12:01 +00:00
erkale-pseudopotentials
fastcap science/fastcap: fix build on recent current 2020-08-28 22:00:33 +00:00
fasthenry science/fasthenry: fix build on recent current 2020-08-28 22:02:42 +00:00
fastjet
fisicalab
fsom
fvcom
fvcom-mpi
gabedit science/gabedit: Update 2.5.1-061218 -> 2.5.1-300720; Fix build on 13 2020-09-20 22:12:22 +00:00
gamess-us
gchemutils
gdma
getdp
ghemical
ghmm
gnudatalanguage Unbreak bulk -a 2020-09-19 14:15:42 +00:00
gpaw-setups
gramps
grib_api
gromacs
gsmc
gtamsanalyzer
h5utils
h5z-zfp
harminv
hdf science/hdf: update to 4.2.15 to fix build on powerpc64 2020-08-22 20:43:44 +00:00
hdf5
hdf5-18
healpix
hepmc3
highfive science/highfive: Update 2.2.1 -> 2.2.2 2020-08-03 03:29:56 +00:00
hypre science/hypre: Update 2.19.0 -> 2.20.0 2020-09-25 19:01:00 +00:00
iboview
InsightToolkit
isaac-cfd
jdftx
jmol science/jmol: Update 14.31.7 -> 14.31.8 2020-09-29 08:25:14 +00:00
jstrack
kalzium MFH: r554144 2020-11-06 04:27:31 +00:00
kim-api
kst2 Force to rebuild after math/matio update 2020-09-26 16:30:14 +00:00
lammps science/lammps: Update 24Aug2020 -> 18Sep2020 2020-09-19 03:35:55 +00:00
lamprop
latte
libaec
libccp4
libcint science/libcint: Update 3.0.20 -> 3.1.1 2020-08-27 05:37:22 +00:00
libctl
libefp
libgeodecomp - Fix build 2020-09-20 07:35:09 +00:00
libghemical
libgridxc MFH: r552183 2020-10-13 08:13:39 +00:00
libint
libint2
libkml
liblinear Update to 2.41 2020-08-27 18:43:36 +00:00
libmsym
liboglappth
libquantum
libssm
libsvm
libsvm-python
libvdwxc
libxc
liggghts
luscus science/luscus: Fix build on 13 2020-09-21 16:24:03 +00:00
madness
maeparser
massxpert
mbdyn
mcstas
mcstas-comps
mcxtrace
mcxtrace-comps
mdynamix
medit
metaphysicl
minc2
mmdb2
mmtf-cpp
mol2ps
molgif
molscript
molsketch
mpb Change the maintainer entry in rhurlin's ports 2020-09-10 19:17:38 +00:00
mpqc
msms
multiwfn
namd
nest
netcdf
netcdf-cxx
netcdf-fortran science/netcdf-fortran: Unbreak build with GCC 10 2020-07-26 17:58:54 +00:00
nifticlib
nwchem
nwchem-data
octopus
openbabel
openkim
openkim-models
opensim-core
opensph science/opensph: Use USE_WX instead of the LIB_DEPENDS with the WX library 2020-09-01 20:00:46 +00:00
opsin
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR Update to 1.38 2020-07-24 07:10:54 +00:00
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-WebService-Elevation-USGS
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit
packmol
pagmo2 science/pagmo2: Update 2.15.0-95 -> 2.15.0-102 2020-09-19 19:52:53 +00:00
paje
pcmsolver
PETSc
plumed
pnetcdf
pulseview
py-abipy
py-asdf Update to 2.7.1 2020-08-21 21:24:31 +00:00
py-ase science/py-ase: Update 3.20.0 -> 3.20.1 2020-09-05 06:05:19 +00:00
py-avogadrolibs
py-cdo
py-chainer Bump PORTREVISION for devel/protobuf shlib change 2020-08-30 20:19:41 +00:00
py-chainer-chemistry science/py-chainer-chemistry: Update 0.7.0 -> 0.7.1 2020-08-17 20:05:58 +00:00
py-chempy
py-coards
py-DendroPy
py-dlib science/py-dlib: Fix plist. 2020-08-29 18:15:01 +00:00
py-eccodes-python
py-geolinks
py-geomet
py-geometer
py-geometric Unbreak bulk -a 2020-09-19 14:15:42 +00:00
py-gpaw
py-GPy
py-GPyOpt
py-gsd science/py-gsd: Update 2.1.2 -> 2.2.0 2020-09-06 14:40:22 +00:00
py-h5json
py-h5py
py-kim-query science/py-kim-query: Update 1.0.0 -> 1.1.0 2020-08-28 19:44:09 +00:00
py-kinematics
py-kliff
py-liac-arff Update to 2.5.0 2020-09-05 10:10:15 +00:00
py-lifelines Unbreak bulk -a 2020-09-19 14:15:42 +00:00
py-MDAnalysis
py-MDAnalysisTests
py-mdp science/py-mdp: remove optional expired dependency on devel/py-pp 2020-08-15 11:19:52 +00:00
py-mmtf-python
py-molmod
py-moltemplate science/py-moltemplate: Update 2.18.3 -> 2.18.6 2020-09-29 08:19:32 +00:00
py-netCDF4
py-obspy Unbreak bulk -a 2020-09-19 14:15:42 +00:00
py-oddt
py-OpenFermion Unbreak bulk -a 2020-09-19 14:15:42 +00:00
py-openpiv science/py-openpiv: update to 0.22.3 2020-09-28 21:18:16 +00:00
py-paida
py-paramz
py-phono3py Unbreak bulk -a 2020-09-19 14:15:42 +00:00
py-phonopy science/py-phonopy: Update 2.7.1 -> 2.8.0 2020-09-24 01:03:56 +00:00
py-pupynere
py-pyaixi
py-pycsw
py-pydicom
py-PyFR
py-pygeodesy
py-pygeometa
py-pygmo2 science/py-pygmo2: Update 2.15.0-121 -> 2.15.0-139 2020-09-19 19:55:21 +00:00
py-pymatgen
py-pymol
py-pyosf
py-pysal
py-pyteomics Unbreak bulk -a 2020-09-19 14:15:42 +00:00
py-qcelemental science/py-qcelemental: Update 0.12.0 -> 0.16.0 2020-09-13 19:43:38 +00:00
py-qcengine science/py-qcengine: Update 0.10.0 -> 0.16.0 2020-09-13 19:47:28 +00:00
py-qspin
py-quantities
py-rmf
py-rmsd
py-ruffus
py-scikit-fuzzy Unbreak bulk -a 2020-09-19 14:15:42 +00:00
py-scikit-learn
py-scikit-optimize Update to 0.8.1 2020-09-06 15:37:09 +00:00
py-scikit-sparse
py-scimath - Update to 4.2.0 2020-09-25 03:11:49 +00:00
py-scipy
py-scoria
py-SimpleSpectral
py-spglib science/py-spglib: Update 1.15.1 -> 1.16.0 2020-08-03 07:26:39 +00:00
py-tensorflow Bump PORTREVISION for devel/protobuf shlib change 2020-08-30 20:19:41 +00:00
py-veusz
pybrain
pynn
qbox science/qbox: Update 1.71.5 -> 1.72.0 2020-09-25 19:01:45 +00:00
qcl
qiskit-aer devel/libfmt: Update to 7.0.3 2020-09-07 21:19:41 +00:00
qmcpack
quantum-espresso
quantum-espresso-pseudopotentials
qwalk
R-cran-AMORE
R-cran-bayesm
R-cran-cmprsk
R-cran-DCluster
R-cran-e1071
R-cran-eco
R-cran-Epi - Update to 2.41 2020-08-10 08:08:06 +00:00
R-cran-epicalc
R-cran-etm - Update to 1.1.1 2020-09-09 08:59:47 +00:00
R-cran-FAdist
R-cran-fastICA
R-cran-kernlab
R-cran-snow
R-cran-som
R-cran-udunits2
rdkit
rmf
rubygem-ai4r
rubygem-cdo
rubygem-rgeo
rubygem-rgeo-geojson
rubygem-rgeo-proj4
rubygem-rgeo-shapefile Update to 3.0.0 2020-09-05 21:35:09 +00:00
rubygem-ruby-dcl
rubygem-ruby-netcdf
scidavis
siesta
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo science/silo: Backport of patches from Debian to support Python 3 2020-09-27 11:32:55 +00:00
simbody
simgrid science/simgrid: add libunwind to dependencies on powerpc64 2020-09-12 19:19:49 +00:00
simint
simlib
simsmith
smoldyn
sparta
spglib science/spglib: Update 1.15.1 -> 1.16.0 2020-08-03 07:26:08 +00:00
step MFH: r554144 2020-11-06 04:27:31 +00:00
svmlight
szip
teem
tfel
tinker science/tinker: Update 8.7.2 -> 8.8.1 2020-08-17 20:37:46 +00:00
udunits
v_sim - Fix build without NLS (missing gettext-tools dependency) and without EXAMPLES (broken patching) 2020-08-04 16:00:43 +00:00
vipster devel/libfmt: Update to 7.0.3 2020-09-07 21:19:41 +00:00
vmd
voro++
votca science/votca: Update 1.6.1 -> 1.6.2 2020-08-29 18:44:12 +00:00
wannier90
wwplot
wxmacmolplt
xcrysden science/xcrysden: Fix build on 13 by adding -fcommon 2020-09-21 00:45:07 +00:00
xdrawchem
xfce4-equake-plugin
xtb science/xtb: update to 6.3.3 2020-09-20 21:19:02 +00:00
yoda
Makefile Remove expired ports: 2020-09-19 13:01:00 +00:00