ab9154efa7
graphical models via Gibbs sampling, not wholy unlike classic BUGS. PR: ports/66648 Submitted by: Eric van Gyzen <vangyzen@stat.duke.edu>
363 lines
16 KiB
Plaintext
363 lines
16 KiB
Plaintext
bin/jags
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include/JAGS/Console.h
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include/JAGS/JAGSVersion.h
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include/JAGS/distributions/DistDiscrete.h
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include/JAGS/distributions/DistFinite.h
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include/JAGS/distributions/DistReal.h
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include/JAGS/distributions/DistTab.h
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include/JAGS/distributions/Distribution.h
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include/JAGS/functions/FuncTab.h
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include/JAGS/functions/Function.h
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include/JAGS/functions/InverseLinkFunc.h
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include/JAGS/functions/ScalarArgScalarFunc.h
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include/JAGS/functions/ScalarFunc.h
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include/JAGS/graph/AggNode.h
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include/JAGS/graph/ConstantNode.h
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include/JAGS/graph/DeterministicNode.h
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include/JAGS/graph/Graph.h
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include/JAGS/graph/GraphMarks.h
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include/JAGS/graph/LogicalNode.h
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include/JAGS/graph/MixtureNode.h
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include/JAGS/graph/Node.h
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include/JAGS/graph/NodeError.h
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include/JAGS/graph/OffsetNode.h
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include/JAGS/graph/StochasticNode.h
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include/JAGS/graph/SubSetIndex.h
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include/JAGS/graph/SubSetNode.h
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include/JAGS/matrix/lapack.h
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include/JAGS/matrix/matexp.h
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include/JAGS/matrix/matrix.h
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include/JAGS/model/Compiler.h
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include/JAGS/model/Counter.h
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include/JAGS/model/CounterTab.h
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include/JAGS/model/LogicalFactory.h
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include/JAGS/model/Model.h
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include/JAGS/model/NodeArray.h
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include/JAGS/model/ParseTree.h
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include/JAGS/model/SymTab.h
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include/JAGS/model/TraceMonitor.h
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include/JAGS/model/parser.h
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include/JAGS/model/parser_extra.h
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include/JAGS/sampler/ConjugateBeta.h
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include/JAGS/sampler/ConjugateDirichlet.h
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include/JAGS/sampler/ConjugateFactory.h
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include/JAGS/sampler/ConjugateGamma.h
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include/JAGS/sampler/ConjugateMNormal.h
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include/JAGS/sampler/ConjugateNormal.h
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include/JAGS/sampler/ConjugateSampler.h
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include/JAGS/sampler/ConjugateWishart.h
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include/JAGS/sampler/FiniteFactory.h
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include/JAGS/sampler/FiniteSampler.h
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include/JAGS/sampler/GibbsFactory.h
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include/JAGS/sampler/GibbsSampler.h
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include/JAGS/sampler/Sampler.h
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include/JAGS/sampler/SamplerFactory.h
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include/JAGS/sampler/SliceFactory.h
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include/JAGS/sampler/SliceSampler.h
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include/JAGS/sarray/Index.h
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include/JAGS/sarray/LeftRangeIterator.h
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include/JAGS/sarray/Range.h
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include/JAGS/sarray/RightRangeIterator.h
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include/JAGS/sarray/SArray.h
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lib/libjags.a
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lib/libjags.la
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%%PORTDOCS%%%%DOCSDIR%%/manual.pdf
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%%PORTDOCS%%%%EXAMPLESDIR%%/R/bench.R
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%%PORTDOCS%%%%EXAMPLESDIR%%/R/check.R
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%%PORTDOCS%%%%EXAMPLESDIR%%/ReadMe
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%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/Makefile
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%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/kidney/bench-test1.cmd
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%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/kidney/kidney-data.R
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%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/kidney/kidney-init.R
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%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/kidney/kidney.bug
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%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/kidney/kidney.bug.new
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%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/kidney/test1.cmd
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%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/leuk/bench-test1.R
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%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/leuk/leuk-poisson.bug
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%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/line/bench-test1.R
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%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/lsat/bench-test1.R
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%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/orange/ReadMe
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%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/orange/mvotree-data.R
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%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/orange/mvotree-inits.R
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%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/orange/mvotree.bug
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%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/orange/orange-data.R
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%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/orange/orange-inits.R
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%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/orange/otree.bug
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%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/orange/otree.dat
|
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%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/orange/otree.in
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%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/orange/test1.cmd
|
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%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/pigs/pigs-data.R
|
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%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/pigs/pigs-inits.R
|
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%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/pigs/pigs.bug
|
|
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/pigs/test1.cmd
|
|
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/schools/schools-data.R
|
|
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/schools/schools-inits.R
|
|
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/schools/schools.bug
|
|
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/schools/schools.dat
|
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%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/schools/test.bug
|
|
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/schools/test1.cmd
|
|
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/stagnant/ReadMe
|
|
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/stagnant/notest1.cmd
|
|
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/stagnant/notest2.cmd
|
|
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/stagnant/stagnant-data.R
|
|
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/stagnant/stagnant-inits1.R
|
|
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/stagnant/stagnant-inits2.R
|
|
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/stagnant/stagnant-inits3.R
|
|
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/stagnant/stagnant-inits4.R
|
|
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/stagnant/stagnant.bug
|
|
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/stagnant/stagnant2.bug
|
|
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/stagnant/test3.cmd
|
|
%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/stagnant/test4.cmd
|
|
@dirrm include/JAGS/sarray
|
|
@dirrm include/JAGS/sampler
|
|
@dirrm include/JAGS/model
|
|
@dirrm include/JAGS/matrix
|
|
@dirrm include/JAGS/graph
|
|
@dirrm include/JAGS/functions
|
|
@dirrm include/JAGS/distributions
|
|
@dirrm include/JAGS
|
|
%%PORTDOCS%%@dirrm %%DOCSDIR%%
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol2/stagnant
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol2/schools
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol2/pigs
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol2/orange
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol2/jaw
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol2/ice
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol2/hearts
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol2/eyes
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol2/dugongs
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol2/cervix
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol2/birats
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol2/biops
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol2/beetles
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol2/asia
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol2/alli
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol2/air
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol2
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol1/seeds
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol1/salm
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol1/rats
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol1/pump
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol1/oxford/old
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol1/oxford
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol1/mice
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol1/lsat
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol1/litters
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol1/line
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol1/leuk
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol1/kidney
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol1/equiv
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol1/epil
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol1/dyes
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol1/bones
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol1/blocker
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol1
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/R
|
|
%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%
|