Joseph Mingrone 6ce3a81f62 biology/diamond: Update to version 0.9.13 ... Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.13		2017-11-17 20:11:05 +00:00
..
ariadne
artemis
avida
babel
bcftools	biology/htslib biology/bcftools biology/samtools: Update to 1.6	2017-10-25 10:19:50 +00:00
bedtools
biococoa
blat
bowtie
bowtie2
bwa
cd-hit
cdbfasta
chemeq
clustalw
consed
crux
diamond	biology/diamond: Update to version 0.9.13	2017-11-17 20:11:05 +00:00
emboss
fasta
fasta3
fastdnaml
fastool
fasttree
fastx-toolkit
fluctuate
garlic
gff2ps
gmap
gperiodic
grappa
hmmer	- Update to 3.1b2	2017-11-11 12:51:52 +00:00
htslib	biology/htslib biology/bcftools biology/samtools: Update to 1.6	2017-10-25 10:19:50 +00:00
iolib
iqtree	Fix USE_GITHUB usage.	2017-11-06 14:24:39 +00:00
jalview
jellyfish
lagan
lamarc
libgtextutils
libsbml
linux-foldingathome
mafft
mapm3
migrate
molden	biology/molden: chase another intransparent upstream distfile upgrade.	2017-11-01 03:48:30 +00:00
mopac
mrbayes
mummer	- Fix installing scripts and support binaries	2017-10-30 02:27:23 +00:00
muscle
ncbi-blast+
ncbi-toolkit
njplot
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Coordinate
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-FeatureIO
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-BioPerl
p5-BioPerl-Run
p5-transdecoder
paml
phrap
phred
phylip
phyml
plink
plinkseq
primer3
protomol
psi88
py-biom-format
py-biopython
py-bx-python
py-pysam	biology/py-pysam: Update to 0.13	2017-11-05 19:12:28 +00:00
pycogent
pyfasta
python-nexus
recombine
ruby-bio
rubygem-bio
samtools	biology/htslib biology/bcftools biology/samtools: Update to 1.6	2017-10-25 10:19:50 +00:00
seaview
seqan
seqan1
seqan-apps
seqio
seqtools
sim4
slclust
ssaha
t_coffee
tinker	Fix the context of some patches so that they apply with stricter patch(1)	2017-11-09 20:45:04 +00:00
treepuzzle
trimmomatic
tRNAscan-SE
ugene
vcftools
velvet
wise
xmolwt
Makefile