.. |
adun
|
Chase math/gsl update,
|
2009-12-01 20:33:45 +00:00 |
ariadne
|
|
|
artemis
|
|
|
avida
|
For ports maintained by ports@FreeBSD.org, remove names and/or
|
2009-12-21 02:19:12 +00:00 |
babel
|
|
|
belvu
|
|
|
biococoa
|
|
|
biojava
|
|
|
blast
|
- SUB_FILES += pkg-message
|
2010-01-09 23:51:26 +00:00 |
blat
|
|
|
boinc-simap
|
- Annotate that 8.x no longer needs libmap hack
|
2009-10-01 07:34:28 +00:00 |
chemeq
|
|
|
clustalw
|
- Fix fetch error
|
2009-12-27 03:05:03 +00:00 |
consed
|
|
|
crimap
|
- actually remove old patch
|
2010-01-17 00:16:34 +00:00 |
crux
|
Update to Crux 1.2.0.
|
2009-09-19 17:58:13 +00:00 |
distribfold
|
|
|
dna-qc
|
For ports maintained by ports@FreeBSD.org, remove names and/or
|
2009-12-21 02:19:12 +00:00 |
dotter
|
- broken checksum mismatch
|
2009-11-19 12:43:06 +00:00 |
embassy
|
- Update MASTER_SITES
|
2009-08-14 08:33:22 +00:00 |
emboss
|
- Update MASTER_SITES
|
2009-08-14 08:33:22 +00:00 |
fasta
|
For ports maintained by ports@FreeBSD.org, remove names and/or
|
2009-12-21 02:19:12 +00:00 |
fasta3
|
Update to 35.4.9
|
2009-08-23 15:47:37 +00:00 |
fastdnaml
|
|
|
finchtv
|
|
|
fluctuate
|
For ports maintained by ports@FreeBSD.org, remove names and/or
|
2009-12-21 02:19:12 +00:00 |
garlic
|
|
|
genpak
|
|
|
gff2ps
|
|
|
gmap
|
|
|
gperiodic
|
|
|
grappa
|
|
|
hmmer
|
|
|
iolib
|
Io_lib is a library of file reading and writing code to provide a
|
2009-08-28 23:34:20 +00:00 |
jalview
|
|
|
kinemage
|
|
|
L-Breeder
|
|
|
lagan
|
|
|
lamarc
|
|
|
libgenome
|
-Repocopy devel/libtool15 -> libtool22 and libltdl15 -> libltdl22.
|
2009-08-02 19:36:34 +00:00 |
libsbml
|
- Mark MAKE_JOBS_UNSAFE
|
2009-11-20 22:53:09 +00:00 |
linux-foldingathome
|
|
|
lsysexp
|
|
|
mafft
|
|
|
mapm3
|
- Mark MAKE_JOBS_UNSAFE
|
2009-11-20 22:53:09 +00:00 |
migrate
|
For ports maintained by ports@FreeBSD.org, remove names and/or
|
2009-12-21 02:19:12 +00:00 |
molden
|
Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now
|
2009-09-13 00:08:01 +00:00 |
mopac
|
- Update to 7.1.11
|
2009-12-22 11:25:15 +00:00 |
mrbayes
|
|
|
mummer
|
- Update my mail address to FreeBSD
|
2009-11-27 22:52:30 +00:00 |
muscle
|
|
|
ncbi-toolkit
|
- use $SUB_FILES to dynamically adjust pkg-message
|
2010-01-31 03:42:20 +00:00 |
njplot
|
|
|
ortep3
|
For ports maintained by ports@FreeBSD.org, remove names and/or
|
2009-12-21 02:19:12 +00:00 |
p5-AcePerl
|
- Remove unneeded dependencies which is in perl-5.8.9 dist
|
2010-01-29 14:52:21 +00:00 |
p5-Bio-ASN1-EntrezGene
|
|
|
p5-Bio-Das
|
- Update to 1.14
|
2009-09-08 12:08:12 +00:00 |
p5-Bio-Glite
|
- Remove unneeded dependencies which is in perl-5.8.9 dist
|
2010-01-29 14:52:21 +00:00 |
p5-Bio-Graphics
|
- Remove unneeded dependencies which is in perl-5.8.9 dist
|
2010-01-29 14:52:21 +00:00 |
p5-Bio-MAGETAB
|
|
|
p5-Bio-NEXUS
|
Bio::NEXUS package provides an object-oriented, Perl-based
|
2009-08-22 20:39:51 +00:00 |
p5-Bio-Phylo
|
For ports maintained by ports@FreeBSD.org, remove names and/or
|
2009-12-21 02:19:12 +00:00 |
p5-Bio-SCF
|
- Update to 1.03
|
2010-01-09 01:21:21 +00:00 |
p5-bioperl
|
- Remove unneeded dependencies which is in perl-5.8.9 dist
|
2010-01-29 14:52:21 +00:00 |
p5-bioperl-run
|
- Relax check on bioperl version; people keep forgetting to update this check
|
2009-08-02 20:00:08 +00:00 |
paml
|
- Update to 4.3
|
2009-08-13 17:00:04 +00:00 |
phd2fasta
|
|
|
phrap
|
|
|
phred
|
|
|
phylip
|
For ports maintained by ports@FreeBSD.org, remove names and/or
|
2009-12-21 02:19:12 +00:00 |
phyml
|
|
|
platon
|
Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now
|
2009-09-13 00:08:01 +00:00 |
povchem
|
|
|
primer3
|
- Update to 1.1.4
|
2009-12-18 02:55:57 +00:00 |
protomol
|
- Switch SourceForge ports to the new File Release System: categories starting with B,C
|
2009-08-22 00:15:15 +00:00 |
psi88
|
Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now
|
2009-09-13 00:08:01 +00:00 |
py-biopython
|
- Update to 1.53
|
2010-01-06 00:29:25 +00:00 |
pycogent
|
- Update to 1.4
|
2009-12-17 06:51:53 +00:00 |
pyfasta
|
- Update to 0.3.7
|
2009-12-24 03:14:34 +00:00 |
pymol
|
|
|
python-nexus
|
python-nexus is a generic nexus (phylogenetics) file format(.nex, .trees)
|
2009-12-29 13:39:14 +00:00 |
rasmol
|
|
|
recombine
|
For ports maintained by ports@FreeBSD.org, remove names and/or
|
2009-12-21 02:19:12 +00:00 |
ruby-bio
|
|
|
seaview
|
|
|
seqio
|
For ports maintained by ports@FreeBSD.org, remove names and/or
|
2009-12-21 02:19:12 +00:00 |
sim4
|
|
|
ssaha
|
|
|
t_coffee
|
|
|
tinker
|
Bump PORTREVISION for everything that sets USE_FORTRAN=yes which now
|
2009-09-13 00:08:01 +00:00 |
treepuzzle
|
|
|
treeviewx
|
|
|
tRNAscan-SE
|
|
|
velvet
|
Velvet is a de novo genomic assembler specially designed for short read
|
2009-11-07 01:23:59 +00:00 |
wise
|
- SBU_FILES += pkg-message
|
2010-01-08 01:30:20 +00:00 |
xdrawchem
|
|
|
xmolwt
|
|
|
Makefile
|
python-nexus is a generic nexus (phylogenetics) file format(.nex, .trees)
|
2009-12-29 13:39:14 +00:00 |