Baptiste Daroussin 9f1de9b900 Convert USE_NCURSES by USES=ncurses ... Convert USE_READLINE by USES=readline		2013-05-06 15:34:17 +00:00
..
adun	- reset MAINTAINER	2012-06-26 05:44:19 +00:00
ariadne	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
artemis	Decommissioning java 1.5 (EOLed since October 2009):	2012-12-10 11:25:27 +00:00
avida	Convert USE_NCURSES by USES=ncurses	2013-05-06 15:34:17 +00:00
babel	- Mark conflict with science/openbabel	2012-12-11 14:24:51 +00:00
biococoa	- cleanup comments	2012-10-13 13:39:56 +00:00
biojava	Remove hardcoded extract dependency on diablo-jdk16, directly use USE_ZIP	2012-12-11 07:26:38 +00:00
blast	- Take maintainership	2012-10-01 14:55:55 +00:00
blat	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
boinc-simap	Use bsd.port.options.mk instead of bsd.port.{pre|post}.mk	2013-04-29 12:20:35 +00:00
chemeq	Convert USE_BISON to USES= bison	2013-03-08 11:32:11 +00:00
clustalw
consed
crux	- adoption of optionsNG	2013-03-18 06:48:55 +00:00
dotter	- Mark broken checksum mismatch	2013-03-25 01:41:31 +00:00
embassy	- Convert USE_ICONV=yes to USES=iconv	2013-04-27 08:50:46 +00:00
emboss	- Take maintainership	2012-10-01 14:55:55 +00:00
fasta
fasta3	- Take maintainership	2012-10-01 14:55:55 +00:00
fastdnaml
finchtv	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
fluctuate
garlic	Fix typos in COMMENT	2012-07-25 06:32:06 +00:00
genpak	- update png to 1.5.10	2012-06-01 05:26:28 +00:00
gff2ps	- Update MASTER_SITES and WWW: line	2012-02-19 23:24:52 +00:00
gmap
gperiodic	- Convert USE_GETTEXT to USES (part 3)	2013-04-24 18:10:30 +00:00
grappa
hmmer	- Take maintainership	2012-10-01 14:55:55 +00:00
iolib	- Update to 1.13.0	2013-04-30 15:41:49 +00:00
jalview	Decommissioning java 1.5 (EOLed since October 2009):	2012-12-10 11:25:27 +00:00
lagan	- Update to version 2.0	2012-11-15 07:04:29 +00:00
lamarc	- Fix build with clang	2012-12-03 11:27:47 +00:00
libgenome
libsbml	- adoption of optionsNG	2013-03-18 06:50:12 +00:00
linux-foldingathome
mafft	Mark as broken on sparc64: depends on thread-local storage, which is not	2012-09-08 08:30:39 +00:00
mapm3
migrate	Update MASTERSITES for my server to use https	2013-04-26 04:03:54 +00:00
molden	- Update to 5.0.6	2013-04-26 06:57:37 +00:00
mopac	Workaround the way mopac installs executables.	2013-04-29 17:30:09 +00:00
mrbayes
mummer	- Update to 3.23	2012-01-17 00:51:39 +00:00
muscle	Fix typos in COMMENT	2012-07-24 07:19:21 +00:00
ncbi-toolkit	- Update to 2012.06.20	2013-03-14 05:27:58 +00:00
njplot	s/X11BASE/LOCALBASE/, or equivalent.	2012-06-24 21:53:38 +00:00
ortep3
p5-AcePerl	- Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or	2012-06-10 18:42:48 +00:00
p5-Bio-ASN1-EntrezGene	- remove maintainer tags from pkg-descr	2011-10-22 23:50:23 +00:00
p5-Bio-Das	Cleanup supporting perl version 5.8 and 5.10,	2012-12-17 15:39:36 +00:00
p5-Bio-Das-Lite
p5-Bio-GFF3	- Update to 1.5	2012-12-16 04:22:15 +00:00
p5-Bio-Glite	For perl@ owned ports:	2013-03-29 00:44:53 +00:00
p5-Bio-Graphics	Add missing item to pkg-plist reported by QAT but not reported by poudriere.	2013-03-03 15:22:43 +00:00
p5-Bio-MAGETAB	For perl@ owned ports:	2013-03-29 00:44:53 +00:00
p5-Bio-NEXUS	For perl@ owned ports:	2013-03-29 00:44:53 +00:00
p5-Bio-Phylo	- Update to 0.52 [1]	2013-02-16 14:58:51 +00:00
p5-Bio-SCF	At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450	2012-01-21 17:40:15 +00:00
p5-bioperl	- Take maintainership	2012-10-01 14:55:55 +00:00
p5-bioperl-run	- Remove SITE_PERL from *_DEPENDS	2012-06-30 14:53:22 +00:00
paml
phd2fasta	Remove unneeded escaping	2013-04-26 16:23:13 +00:00
phrap
phred
phylip
phyml	- Update to 20121109.	2013-02-04 10:07:30 +00:00
platon	The vast majority of pkg-descr files had the following format when they	2011-10-24 09:11:38 +00:00
plink	Add new ports biology/plink [1] and biology/plinkseq [2]:	2012-09-27 09:59:25 +00:00
plinkseq	Fix build with protobuf-2.5.0	2013-03-21 14:09:22 +00:00
povchem	- remove empty files	2013-02-15 08:57:19 +00:00
primer3	- Take maintainership	2012-10-01 14:55:55 +00:00
protomol	- adoption of optionsNG	2013-03-18 06:54:39 +00:00
psi88
py-biopython	- update to 1.60	2012-09-25 08:06:42 +00:00
pycogent	- Update to 1.5.3	2012-10-08 03:17:02 +00:00
pyfasta	- Update to 0.4.5	2012-02-23 13:43:25 +00:00
pymol	Switch from libglut to freeglut and retire libglut. Libglut hasn't been	2012-08-04 22:52:02 +00:00
python-nexus	- Update to 0.87	2011-12-23 08:05:00 +00:00
rasmol
recombine
ruby-bio	- adoption of optionsNG	2013-03-18 06:55:42 +00:00
seaview	- Update to 4.4.1	2013-03-26 01:08:40 +00:00
seqan	- convert USE_CMAKE to USES	2013-03-22 20:06:14 +00:00
seqio
sim4
ssaha	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
t_coffee	- Update to 9.03.	2013-01-14 08:04:38 +00:00
tinker	- Update to 6.2.02	2013-04-29 14:23:03 +00:00
treepuzzle
treeviewx	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
tRNAscan-SE
ugene	Unbreak on 7.X and i386 systems.	2013-02-25 13:00:15 +00:00
velvet
wise	Fix build by adding an explicit dep on pkgconf	2013-05-03 20:48:34 +00:00
xdrawchem	- Strip header at request of original creator	2013-01-27 05:55:20 +00:00
xmolwt	Finish converting the whole ports tree to USES=pkgconfig	2013-04-23 14:20:25 +00:00
Makefile	Add Unipro UGENE, a free open-source crowss-platform bioinformatics software.	2013-02-23 04:50:48 +00:00