freebsd-ports/science
Yuri Victorovich 38baf6966d science/metaphysicl: 0.5.2 -> 0.6.0
Reported by:	portscout
2019-10-13 21:17:17 +00:00
..
2d-rewriter
abinit devel/openmp: update to 9.0.0 2019-09-21 18:59:57 +00:00
afni science/afni: Remove dependency on libXp 2019-09-28 10:56:15 +00:00
agrum Switch default devel/llvm* to 90 2019-09-20 19:58:36 +00:00
aircraft-datcom
ALPSCore devel/boost-*: update to 1.71.0 2019-08-19 15:35:27 +00:00
antioch
apbs
atom
atompaw
avogadro2
avogadrolibs
bagel devel/boost-*: update to 1.71.0 2019-08-19 15:35:27 +00:00
bddsolve devel/boost-*: update to 1.71.0 2019-08-19 15:35:27 +00:00
berkeleygw
bodr
brian
buddy
cdcl
cdf - Switch to new test framework (note that test currently segfaults) 2019-08-28 09:02:41 +00:00
cdo
cgnslib
cgribex
checkmol - Rebuild bootstrap (ppcx64 and ppc386) with ld patches 2019-09-03 15:51:50 +00:00
chemical-mime-data
chemps2
chemtool
chemtool-devel
chrono devel/openmp: update to 9.0.0 2019-09-21 18:59:57 +00:00
clhep
clipper
code_saturne devel/openmp: update to 9.0.0 2019-09-21 18:59:57 +00:00
colt
coordgenlibs devel/boost-*: update to 1.71.0 2019-08-19 15:35:27 +00:00
coot
cp2k
cp2k-data
crf++
dalton
datawarrior
dcl
devisor
dftbplus
dkh
dlib-cpp
dlpoly-classic
drawxtl
dvc
eccodes Update to 2.13.1 2019-08-31 17:11:36 +00:00
elk
epte
erd
erkale Fix LIB_DEPENDS 2019-10-13 08:59:41 +00:00
erkale-pseudopotentials
esys-particle devel/boost-*: update to 1.71.0 2019-08-19 15:35:27 +00:00
fastcap
fasthenry
fisicalab
fleur science/fleur: Spell HDF5_CMAKE_ON correctly 2019-10-06 08:37:06 +00:00
fsom
fvcom Bump PORTREVISION for science/netcdf-fortran shlib change 2019-08-31 17:11:57 +00:00
fvcom-mpi Bump PORTREVISION for science/netcdf-fortran shlib change 2019-08-31 17:11:57 +00:00
gabedit devel/openmp: update to 9.0.0 2019-09-21 18:59:57 +00:00
gamess-us
gchemutils
gdma
getdp
ghemical
ghmm
gnudatalanguage
gpaw-setups
gramps
grib_api Mark CONFLICTS_INSTALL between science/eccodes and science/grib_api 2019-08-31 11:21:16 +00:00
gromacs science/gromacs: Update 2019.3 -> 2019.4 2019-10-05 22:57:39 +00:00
gsmc
gtamsanalyzer
gwyddion
h5utils
h5z-zfp
harminv
hdf
hdf5 Add PARALLEL option 2019-09-30 11:32:04 +00:00
hdf5-18
healpix
hypre
iboview devel/boost-*: update to 1.71.0 2019-08-19 15:35:27 +00:00
InsightToolkit - Update devel/gdcm to 3.0.3. 2019-10-07 21:20:51 +00:00
isaac-cfd
jdftx
jmol science/jmol: Update 14.29.53 -> 14.29.54 2019-10-13 17:37:41 +00:00
jstrack Update to version 3.4.0, which includes updated documentation, links to 2019-10-02 16:14:46 +00:00
kalzium KDE Applications: update to 19.08.1 2019-09-05 18:20:14 +00:00
kim-api science/kim-api: Update 2.1.2 -> 2.1.3 2019-08-31 14:45:22 +00:00
kst2
lammps devel/openmp: update to 9.0.0 2019-09-21 18:59:57 +00:00
lamprop
latte devel/openmp: update to 9.0.0 2019-09-21 18:59:57 +00:00
libaec
libccp4
libcint
libctl
libefp
libgeodecomp devel/boost-*: update to 1.71.0 2019-08-19 15:35:27 +00:00
libghemical
libgridxc
libint
libint2 devel/boost-*: update to 1.71.0 2019-08-19 15:35:27 +00:00
libkml devel/google{test,mock}: update to 1.10.0 2019-10-05 00:42:20 +00:00
liblinear
libmsym
liboglappth
libquantum
libssm
libsvm
libsvm-python
libvdwxc
libxc
liggghts
lm
luscus
madness Update devel/tbb to 2019.8 and bump dependent ports' revisions 2019-09-25 10:03:49 +00:00
maeparser science/maeparser: Update 1.2.1 -> 1.2.2 2019-10-13 15:15:08 +00:00
massxpert
mbdyn
mcstas
mcstas-comps
mcxtrace
mcxtrace-comps
mdynamix
medit
meep
metaf2xml Deprecate a few ports 2019-09-15 17:28:08 +00:00
metaphysicl science/metaphysicl: 0.5.2 -> 0.6.0 2019-10-13 21:17:17 +00:00
minc2
mmdb2
mmtf-cpp
mol2ps - Rebuild bootstrap (ppcx64 and ppc386) with ld patches 2019-09-03 15:51:50 +00:00
molgif Go ports: cleanup, finish transition to USES=go started with r505321 (cat. misc-shells) 2019-09-29 22:31:57 +00:00
molscript
molsketch
mpb
mpqc
msms
multiwfn
namd
ncnn science/ncnn: 20190611-113 -> 20190908 2019-09-15 00:36:39 +00:00
nest devel/openmp: update to 9.0.0 2019-09-21 18:59:57 +00:00
netcdf Update to 4.7.1 2019-08-31 17:11:41 +00:00
netcdf-cxx Update to 4.3.1 2019-09-12 19:06:48 +00:00
netcdf-fortran Update to 4.5.2 2019-09-26 18:13:09 +00:00
nifticlib
nwchem science/nwchem: Update 6.8.1.20190816 (b8ef5a23b) -> 6.8.1.20190820 (2450e37ef) 2019-08-21 05:43:55 +00:00
nwchem-data
octopus
openbabel
openkim
openkim-models
openmx devel/openmp: update to 9.0.0 2019-09-21 18:59:57 +00:00
opensim-core science/opensim-core: Add the JAVA option that adds the Java binding 2019-08-24 22:09:03 +00:00
opensph
opsin
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS Update to 0.115 2019-09-03 19:12:19 +00:00
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit
packmol science/packmol: Pack molecules in defined regions of space 2019-09-22 19:06:43 +00:00
pagmo2 devel/boost-*: update to 1.71.0 2019-08-19 15:35:27 +00:00
paje
paraview
pcmsolver
PETSc science/PETSc: unbreak on ARM platforms 2019-09-15 10:39:17 +00:00
pnetcdf
psychopy
pulseview devel/boost-*: update to 1.71.0 2019-08-19 15:35:27 +00:00
py-abipy
py-asdf Change RUN_DEPENDS from py-semantic_version to py-semantic_version26 2019-09-26 18:16:28 +00:00
py-ase science/py-ase: Update 3.18.0 -> 3.18.1 2019-09-21 14:18:58 +00:00
py-avogadrolibs
py-cdo
py-chainer science/py-chainer: Update 6.3.0 -> 6.4.0 2019-10-05 23:24:21 +00:00
py-chainer-chemistry science/py-chainer-chemistry: Update 0.5.0 -> 0.6.0 2019-10-06 17:48:09 +00:00
py-chempy science/py-chempy: Update 0.7.8 -> 0.7.9 2019-10-12 15:55:43 +00:00
py-coards
py-DendroPy
py-dlib devel/boost-*: update to 1.71.0 2019-08-19 15:35:27 +00:00
py-eccodes-python
py-geometer Update to 0.2.0 2019-09-25 20:41:50 +00:00
py-gpaw
py-GPy devel/openmp: update to 9.0.0 2019-09-21 18:59:57 +00:00
py-GPyOpt
py-gsd science/py-gsd: Update 1.8.1 -> 1.9.3 2019-10-12 16:47:23 +00:00
py-h5py Update to 2.10.0 2019-09-07 22:44:39 +00:00
py-hcluster
py-kinematics
py-lifelines
py-MDAnalysis
py-MDAnalysisTests
py-mdp
py-mlpy
py-mmtf-python
py-molmod science/py-molmod: Update 1.4.4 -> 1.4.5 2019-10-12 16:44:38 +00:00
py-netCDF4
py-obspy
py-oddt
py-OpenFermion science/py-OpenFermion: Update 0.9.0 -> 0.10.0 2019-08-19 10:17:11 +00:00
py-openpiv
py-paida
py-paramz
py-phono3py devel/openmp: update to 9.0.0 2019-09-21 18:59:57 +00:00
py-phonopy science/py-phonopy: Update 2.2.0 -> 2.3.0 2019-08-31 06:06:51 +00:00
py-pupynere
py-pyaixi
py-pydicom - Update to 1.3.0 2019-09-04 02:25:53 +00:00
py-PyFR devel/openmp: update to 9.0.0 2019-09-21 18:59:57 +00:00
py-pygeodesy
py-pymatgen
py-pymol
py-pyosf
py-PyQuante
py-pysal
py-pyteomics
py-pyteomics.biolccc
py-qcelemental science/py-qcelemental: Update 0.7.0 -> 0.9.0 2019-10-12 16:50:56 +00:00
py-qcengine science/py-qcengine: Update 0.8.2 -> 0.10.0 2019-08-31 06:12:38 +00:00
py-qspin
py-quantities
py-rmf
py-rmsd
py-ruffus science/py-ruffus: Update to 2.8.3 2019-08-15 21:30:19 +00:00
py-ScientificPython
py-scikit-fuzzy
py-scikit-learn
py-scikit-sparse
py-scimath
py-scipy
py-scoria
py-SimpleSpectral
py-spglib science/py-spglib: Update 1.13.0 -> 1.14.1 2019-08-31 15:13:52 +00:00
py-tensorflow science/py-tensorflow: Unbreak by fixing dependencies 2019-10-06 06:47:52 +00:00
py-tensorflow-estimator
py-veusz
py-ws2300
pybrain
pycdf
pynn
qbox science/qbox: Update 1.67.4 -> 1.68.0 2019-09-21 06:35:02 +00:00
qcl
qmcpack devel/openmp: update to 9.0.0 2019-09-21 18:59:57 +00:00
quantum-espresso
quantum-espresso-pseudopotentials
qwalk
R-cran-AMORE
R-cran-bayesm - Update to 3.1.3 2019-08-25 12:24:25 +00:00
R-cran-cmprsk - Update to 2.2-9 2019-10-11 09:12:52 +00:00
R-cran-DCluster
R-cran-e1071
R-cran-eco
R-cran-Epi - Update to 2.38 2019-09-26 10:50:23 +00:00
R-cran-epicalc
R-cran-etm
R-cran-fastICA
R-cran-kernlab
R-cran-snow
R-cran-som
R-cran-udunits2
rdkit science/rdkit: fix build on GCC architectures 2019-08-20 00:08:48 +00:00
rmf devel/boost-*: update to 1.71.0 2019-08-19 15:35:27 +00:00
rubygem-ai4r
rubygem-cdo
rubygem-rgeo Update to 2.1.1 2019-08-28 23:53:27 +00:00
rubygem-rgeo-geojson
rubygem-rgeo-proj4 Update version requirement of RUN_DEPENDS 2019-08-28 23:53:32 +00:00
rubygem-rgeo-shapefile
rubygem-ruby-dcl
rubygem-ruby-netcdf
scidavis
siesta
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo
simbody
simgrid devel/boost-*: update to 1.71.0 2019-08-19 15:35:27 +00:00
simint
simlib
simsmith
smoldyn
sparta science/sparta: Update 16Apr2019 -> 9Sep2019 2019-09-10 03:18:50 +00:00
spglib
step KDE Applications: update to 19.08.1 2019-09-05 18:20:14 +00:00
svmlight
szip
teem
tfel devel/boost-*: update to 1.71.0 2019-08-19 15:35:27 +00:00
tinker
udunits
v_sim
vipster
vmd science/vmd: Add USES=gl 2019-08-15 16:06:32 +00:00
voro++
wannier90
wwplot science/wwplot: Update 0.0.6 -> 0.0.7 2019-08-18 16:49:45 +00:00
wxmacmolplt
xcrysden
xdrawchem
xfce4-equake-plugin science/xfce4-equake-plugin: fix build on GCC architectures 2019-10-02 14:02:33 +00:00
xmakemol Depreacte libGLw and dependent ports 2019-09-07 08:34:53 +00:00
yoda
Makefile science/packmol: Pack molecules in defined regions of space 2019-09-22 19:06:43 +00:00