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abyss
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biology/abyss: Update 2.3.0-3 -> 2.3.1
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2021-04-22 10:18:02 -07:00 |
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ad2vcf
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artemis
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avida
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babel
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bamtools
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bbmap
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biology/bbmap: BBMap short read aligner, and other bioinformatic tools
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2021-04-18 11:21:29 -05:00 |
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bcftools
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bedtools
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bioawk
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biococoa
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biolibc
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bioparser
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biosoup
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bolt-lmm
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bowtie
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bowtie2
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biology/bowtie2: Add support for powerpc64le
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2021-04-18 10:53:14 -05:00 |
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bwa
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canu
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cd-hit
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cdbfasta
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checkm
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clustal-omega
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clustalw
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cufflinks
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cytoscape
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ddocent
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diamond
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dsr-pdb
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edlib
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emboss
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exonerate
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fasta
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Deorbit RESTRICTED && NO_CDROM, part two.
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2021-05-06 13:47:48 +02:00 |
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fasta3
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Deorbit RESTRICTED && NO_CDROM, part one.
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2021-05-06 13:47:41 +02:00 |
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fastahack
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fastdnaml
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fastool
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fastp
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fastqc
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fasttree
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fastx-toolkit
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figtree
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fluctuate
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freebayes
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garlic
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gatk
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gcta
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gemma
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generand
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gff2ps
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gmap
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gperiodic
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graphlan
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groopm
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haplohseq
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hhsuite
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hisat2
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hmmer
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htslib
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hyphy
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igv
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infernal
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iolib
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iqtree
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jalview
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Clean up some things
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2021-05-01 19:55:55 +02:00 |
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jellyfish
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kallisto
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lamarc
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libbigwig
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libgtextutils
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libsbml
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linux-foldingathome
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Deorbit RESTRICTED && NO_CDROM, part one.
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2021-05-06 13:47:41 +02:00 |
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mafft
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mapm3
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migrate
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minimap2
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molden
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Deorbit RESTRICTED && NO_CDROM, part one.
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2021-05-06 13:47:41 +02:00 |
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mopac
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mothur
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mrbayes
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mummer
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muscle
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ncbi-blast+
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ncbi-cxx-toolkit
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ncbi-entrez-direct
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biology/ncbi-entrez-direct: Update to 14.9.20210423_1
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2021-04-26 11:53:11 -05:00 |
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ncbi-toolkit
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ncbi-vdb
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devel/libepoll-shim: update to 0.0.20210418
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2021-04-26 14:17:32 +00:00 |
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ngs-sdk
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biology/ngs-sdk: Fix build on non-amd64 architectures that was broken by explicit 'amd64' instead of $ARCH
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2021-04-15 10:01:31 -07:00 |
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p5-AcePerl
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p5-Bio-ASN1-EntrezGene
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p5-Bio-Cluster
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p5-Bio-Coordinate
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p5-Bio-Das
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p5-Bio-Das-Lite
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p5-Bio-DB-EMBL
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p5-Bio-DB-NCBIHelper
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p5-Bio-FeatureIO
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p5-Bio-GFF3
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p5-Bio-Glite
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p5-Bio-Graphics
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p5-Bio-MAGETAB
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p5-Bio-NEXUS
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p5-Bio-Phylo
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p5-Bio-SCF
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p5-Bio-Variation
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p5-BioPerl
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p5-BioPerl-Run
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p5-transdecoder
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p5-TrimGalore
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paml
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pbbam
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pbseqan
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pear-merger
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phrap
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Deorbit RESTRICTED && NO_CDROM, part two.
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2021-05-06 13:47:48 +02:00 |
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phred
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Deorbit RESTRICTED && NO_CDROM, part two.
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2021-05-06 13:47:48 +02:00 |
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phyml
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Clean up some things
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2021-04-15 10:31:56 +02:00 |
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picard-tools
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plink
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pooler
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primer3
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prodigal
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prodigy-lig
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protomol
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psi88
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py-bigwig
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biology/py-bigwig: Fix packaging with Python 3.8+
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2021-04-21 09:41:29 +02:00 |
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py-biom-format
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py-biopython
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py-bx-python
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py-crossmap
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biology/py-crossmap: Update to 0.5.4
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2021-04-21 08:31:13 -05:00 |
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py-cutadapt
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biology/py-cutadapt: Update strict py-dnaio dep version
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2021-05-04 08:20:39 -05:00 |
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py-dnaio
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biology/py-dnaio: Update to 0.5.1
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2021-05-04 08:19:25 -05:00 |
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py-ete3
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py-Genesis-PyAPI
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py-gffutils
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py-gtfparse
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py-hits
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py-loompy
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py-macs2
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py-multiqc
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py-orange3-bioinformatics
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biology/py-orange3-bioinformatics: Update 3.2.2 -> 4.3.1
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2021-04-27 01:56:19 -07:00 |
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py-orange3-single-cell
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py-pandas-charm
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py-pyfaidx
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biology/py-pyfaid: Update 0.5.9.2 -> 0.5.9.5
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2021-04-23 14:57:50 -07:00 |
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py-pysam
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py-resdk
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biology/py-resdk: Update 13.1.0 -> 13.2.0
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2021-05-05 12:56:26 -07:00 |
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py-scikit-bio
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py-xenaPython
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pyfasta
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python-nexus
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rainbow
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rampler
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readseq
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biology/readseq: Remove $FreeBSD$ tag inserted to silence portlint
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2021-04-18 09:20:28 -05:00 |
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recombine
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ruby-bio
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rubygem-bio
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rubygem-bio-executables
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rubygem-bio-old-biofetch-emulator
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rubygem-bio-shell
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samtools
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scrm
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seaview
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seqan
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seqan1
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seqan-apps
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seqio
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seqkit
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biology/seqkit: Change WWW to the project URL (from GitHub URL)
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2021-04-16 21:00:56 -07:00 |
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seqtk
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sim4
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slclust
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smithwaterman
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snpeff
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biology/snpeff: Improvements to Makefile and patches
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2021-04-19 11:41:58 -05:00 |
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spoa
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stacks
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star
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stringtie
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subread
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tabixpp
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treekin
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treepuzzle
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trimadap
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trimmomatic
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tRNAscan-SE
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ucsc-userapps
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Deorbit RESTRICTED && NO_CDROM, part one.
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2021-05-06 13:47:41 +02:00 |
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ugene
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vcf2hap
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vcf-split
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vcflib
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vcftools
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velvet
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viennarna
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biology/viennarna: Update 2.4.17 -> 2.4.18
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2021-04-23 18:57:38 -07:00 |
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vsearch
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vt
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wise
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Makefile
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Hook biology/ucsc-userapps to the build
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2021-04-25 17:47:23 +00:00 |
