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freebsd-ports/biology
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Will Andrews dbba8af644 Overhaul QT/KDE support: 
- bsd.port.mk update to use bsd.kde.mk for USE_{QT,KDE}*
- Cleanup corresponding ports for bsd.kde.mk update.
- Fix bsd.kde.mk: use correct kdelibs dependency, put qt at the bottom,
  introduce QT_NONSTANDARD variable for nonstandard configure setup.
- Update KDE2 to 2.1.1.  Two patches included in x11/kdelibs2 to fix the
  proxy authentication that was broken for 2.1.1.  Remove old patches.
- Potentially fix kdelibs build for alpha.
- Fix qt-designer 2.3.0 build.
- Ruby stuff left alone since it looks like black magic to me.  Should
  still work w/ compat shims for older USE_QT[,2] style.  Some others
  were also left alone for the same reason.

Reviewed by:	portmgr, ports (bsd.kde.mk+bsd.port.mk)
Submitted by:	David Faure <faure@kde.org> (proxy auth patches)
		Alex Zepeda <garbanzo@kde.org> (old patches removal)
2001-04-03 08:14:43 +00:00
..
babel - Update MASTER_SITES and WWW: line 2001-03-31 15:51:15 +00:00
biojava Initial import of biology/biojava 2000-10-10 11:14:03 +00:00
chemeq Adding chemeq version 1.10. 2000-07-10 03:14:19 +00:00
clustalw - Support CC/CFLAGS/PREFIX properly 2000-10-03 01:10:19 +00:00
deft Missing " in post-patch target 2000-10-11 11:08:51 +00:00
emboss Update the EMBOSS suite to v1.11.0 2001-03-12 10:33:50 +00:00
fasta New port: biology/fasta, the FASTA2 suite of DNA and protein sequence 2001-02-11 16:24:18 +00:00
fasta3 Update to 33.t08.d3. 2001-03-22 09:04:47 +00:00
fastdnaml gmake is needed 2000-10-24 10:33:47 +00:00
gaussian98 add gaussian98, an ab-initio molecular orbital calculation program. 2001-02-10 19:38:20 +00:00
genpak gd.2, not gd.1 2001-03-05 07:39:05 +00:00
gperiodic Update to 1.2.6 2000-12-22 16:19:26 +00:00
hmmer
kinemage Update to version 5.79. 2000-12-11 03:10:04 +00:00
molden Change MASTER_SITE and FTP/WWW lines: caos.kun.nl is cmbi.kun.nl now. 2001-03-04 17:26:37 +00:00
mopac fc is ftn77 now, adjust accordingly. 2000-06-11 19:51:59 +00:00
nab Initiail version of nab (4.2) 2000-10-10 02:57:23 +00:00
ncbi-toolkit Remove trailing period and package name from the pkg-comment. 2000-12-18 20:32:55 +00:00
ortep3 File missing in pkg-plist 2000-10-30 15:36:57 +00:00
p5-AcePerl - Upgrade to version 1.70 2001-03-13 14:50:13 +00:00
p5-bioperl Update to version 0.6.2 2000-10-13 12:43:24 +00:00
paml update to 3.03 2001-04-02 05:16:26 +00:00
phylip updated port biology/phylip from vers 3.5 to 3.6 2001-04-02 05:10:15 +00:00
pkg
platon Update to lastest version 2001-03-12 14:31:53 +00:00
povchem Clean up inefficient perl invocations; use multiple REs in the same call. 2001-01-07 17:49:52 +00:00
psi88 fix WWW: 2001-03-09 12:14:23 +00:00
py-biopython Update to 0.90.d03 2000-09-11 14:56:36 +00:00
rasmol o update to 2.7.2. 2001-03-12 19:16:15 +00:00
seaview Change PKGDIR from pkg/ to . Also fix places where ${PKGDIR} is 2000-10-08 10:23:48 +00:00
sim4 Update to version 2001-02-06 2001-02-19 12:32:57 +00:00
tinker update from 3.7 to 3.8 2001-01-24 17:58:44 +00:00
xdrawchem Overhaul QT/KDE support: 2001-04-03 08:14:43 +00:00
xmolwt Upgrade to 0.4. 2001-03-13 02:03:47 +00:00
Makefile reimport biology/genpak 2001-02-28 02:46:51 +00:00