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databases/py-htsql-mysql: Uses deprecated version of python 2020-08-15 databases/py-htsql-pgsql: Uses deprecated version of python 2020-08-15 databases/py-mysql2pgsql: Uses deprecated version of python 2020-08-15 databases/py-oursql: Uses deprecated version of python 2020-08-15 databases/py-pyPgSQL: Uses deprecated version of python 2020-08-15 databases/py-pyhs: Uses deprecated version of python 2020-08-15 databases/py-pytc: Uses deprecated version of python 2020-08-15 databases/py-riak: Uses deprecated version of python 2020-08-15 databases/py-umemcache: Uses deprecated version of python 2020-08-15 devel/py-Breve: Uses deprecated version of python 2020-08-15 devel/py-PyODE: Uses deprecated version of python 2020-08-15 devel/py-akismet: Uses deprecated version of python 2020-08-15 devel/py-aspects: Uses deprecated version of python 2020-08-15 devel/py-backports.tempfile: Uses deprecated version of python 2020-08-15 devel/py-backports.weakref: Uses deprecated version of python 2020-08-15 devel/py-cfgparse: Uses deprecated version of python 2020-08-15 devel/py-ciphon: Uses deprecated version of python 2020-08-15 devel/py-cjson: Uses deprecated version of python 2020-08-15 devel/py-clonedigger: Uses deprecated version of python 2020-08-15 devel/py-cuisine: Uses deprecated version of python 2020-08-15 devel/py-deliciousapi: Uses deprecated version of python 2020-08-15 devel/py-dialog: Uses deprecated version of python 2020-08-15 devel/py-efl: Uses deprecated version of python 2020-08-15 devel/py-ezpyinline: Uses deprecated version of python 2020-08-15 devel/py-fsm: Uses deprecated version of python 2020-08-15 devel/py-gdbgui: Uses deprecated version of python 2020-08-15 devel/py-gearman: Uses deprecated version of python 2020-08-15 devel/py-generate: Uses deprecated version of python 2020-08-15 devel/py-geotypes: Uses deprecated version of python 2020-08-15 devel/py-gitosis: Uses deprecated version of python 2020-08-15 devel/py-google-apputils: Uses deprecated version of python 2020-08-15 devel/py-hghooks: Uses deprecated version of python 2020-08-15 devel/py-instant: Uses deprecated version of python 2020-08-15 devel/py-jcc: Uses deprecated version of python 2020-08-15 devel/py-json-py: Uses deprecated version of python 2020-08-15 devel/py-json-sempai: Uses deprecated version of python 2020-08-15 devel/py-jsonlib: Uses deprecated version of python 2020-08-15 devel/py-jsonlib2: Uses deprecated version of python 2020-08-15 devel/py-jsonrpclib: Uses deprecated version of python 2020-08-15 devel/py-kayako: Uses deprecated version of python 2020-08-15 devel/py-kid: Uses deprecated version of python 2020-08-15 devel/py-kjbuckets: Uses deprecated version of python 2020-08-15 devel/py-kqueue: Uses deprecated version of python 2020-08-15 devel/py-log4py: Uses deprecated version of python 2020-08-15 devel/py-mwlib.ext: Uses deprecated version of python 2020-08-15 devel/py-mx-experimental: Uses deprecated version of python 2020-08-15 devel/py-option_merge: Uses deprecated version of python 2020-08-15 devel/py-prioritized_methods: Uses deprecated version of python 2020-08-15 devel/py-protocols: Uses deprecated version of python 2020-08-15 devel/py-ptrace: Uses deprecated version of python 2020-08-15 devel/py-pydoop: Uses deprecated version of python 2020-08-15 devel/py-pyke: Uses deprecated version of python 2020-08-15 devel/py-pymtbl: Uses deprecated version of python 2020-08-15 devel/py-pyshapelib: Uses deprecated version of python 2020-08-15 devel/py-pytemplate: Uses deprecated version of python 2020-08-15 devel/py-python2-pythondialog: Uses deprecated version of python 2020-08-15 devel/py-pyutil: Uses deprecated version of python 2020-08-15 devel/py-pyvalid: Uses deprecated version of python 2020-08-15 devel/py-pyxml2obj: Uses deprecated version of python 2020-08-15 devel/py-qpid: Uses deprecated version of python 2020-08-15 devel/py-repoze.what-pylons: Uses deprecated version of python 2020-08-15 devel/py-repoze.who-friendlyform: Uses deprecated version of python 2020-08-15 devel/py-robotframework-ride: Uses deprecated version of python 2020-08-15 devel/py-ruamel.ordereddict: Uses deprecated version of python 2020-08-15 devel/py-sanetime: Uses deprecated version of python 2020-08-15 devel/py-selectors34: Uses deprecated version of python 2020-08-15 devel/py-sqlcc: Uses deprecated version of python 2020-08-15 devel/py-statgrab: Uses deprecated version of python 2020-08-15 devel/py-tconfpy: Uses deprecated version of python 2020-08-15 devel/py-terminable_thread: Uses deprecated version of python 2020-08-15 devel/py-trace2html: Uses deprecated version of python 2020-08-15 devel/py-tvrage: Uses deprecated version of python 2020-08-15 devel/py-tw.forms: Uses deprecated version of python 2020-08-15 devel/py-uncompyle2: Uses deprecated version of python 2020-08-15 devel/py-yum-metadata-parser: Uses deprecated version of python 2020-08-15 devel/rubygem-warden127: No longer needed 2020-08-15 dns/py-dnschain: Uses deprecated version of python 2020-08-15 dns/py-idnkit2: Uses deprecated version of python 2020-08-15 games/colobot: Uses deprecated version of python 2020-08-15 games/endgame-singularity: Uses deprecated version of python 2020-08-15 games/katawa-shoujo: Uses deprecated version of RenPy 2020-08-15 games/pyfa: Uses deprecated version of python 2020-08-15 games/renpy6: Uses deprecated version of python 2020-08-15 games/solarwolf: Uses deprecated version of python 2020-08-15 games/thudboard: Uses deprecated version of python 2020-08-15 graphics/djvusmooth: Uses deprecated version of python 2020-08-15 graphics/py-glewpy: Uses deprecated version of python 2020-08-15 graphics/py-openexr: Uses deprecated version of python 2020-08-15 graphics/py-poppler: Uses deprecated version of python 2020-08-15 graphics/py-pygooglechart: Uses deprecated version of python 2020-08-15 graphics/py-sane: Uses deprecated version of python 2020-08-15 graphics/py-stltools: Uses deprecated version of python 2020-08-15 graphics/sk1: Uses deprecated version of python 2020-08-15 japanese/py-mecab: Uses deprecated version of python 2020-08-15 japanese/py-tegaki-gtk: Uses deprecated version of python 2020-08-15 lang/py-mx-base: Uses deprecated version of python 2020-08-15 mail/mailpile: Uses deprecated version of python 2020-08-15 math/py-ffc: Uses deprecated version of python 2020-08-15 math/py-fiat: Uses deprecated version of python 2020-08-15 math/py-nzmath: Uses deprecated version of python 2020-08-15 math/py-pymc: Uses deprecated version of python 2020-08-15 math/py-ufl: Uses deprecated version of python 2020-08-15 misc/py-socli: Uses deprecated version of python 2020-08-15 misc/py-yolk: Uses deprecated version of python 2020-08-15 multimedia/py-flvlib: Uses deprecated version of python 2020-08-15 net/py-gspreadsheet: Uses deprecated version of python 2020-08-15 net/py-libnet: Uses deprecated version of python 2020-08-15 net/py-netlib: Uses deprecated version of python 2020-08-15 net/py-pynmsg: Uses deprecated version of python 2020-08-15 net/py-rainbowstream: Uses deprecated version of python 2020-08-15 net/py-wolframalpha: Uses deprecated version of python 2020-08-15 net-im/empathy: Uses deprecated version of python 2020-08-15 net-im/farsight2: Uses deprecated version of python 2020-08-15 net-im/py-xmpppy: Uses deprecated version of python 2020-08-15 net-im/telepathy-farsight: Uses deprecated version of python 2020-08-15 net-im/telepathy-python: Uses deprecated version of python 2020-08-15 net-im/telepathy-rakia: Uses deprecated version of python 2020-08-15 net-mgmt/py-pynsca: Uses deprecated version of python 2020-08-15 net-mgmt/py-yapsnmp: Uses deprecated version of python 2020-08-15 net-p2p/py-py2play: Uses deprecated version of python 2020-08-15 news/py-yenc: Uses deprecated version of python 2020-08-15 print/py-pyscript: Uses deprecated version of python 2020-08-15 print/py-stapler: Uses deprecated version of python 2020-08-15 print/py-trml2pdf: Uses deprecated version of python 2020-08-15 science/py-PyQuante: Uses deprecated version of python 2020-08-15 science/py-mlpy: Uses deprecated version of python 2020-08-15 science/py-ws2300: Uses deprecated version of python 2020-08-15 security/py-PF: Uses deprecated version of python 2020-08-15 security/py-cracklib: Uses deprecated version of python 2020-08-15 security/py-fteproxy: Uses deprecated version of python 2020-08-15 security/py-onetime: Uses deprecated version of python 2020-08-15 security/py-pydeep: Uses deprecated version of python 2020-08-15 security/py-slowaes: Uses deprecated version of python 2020-08-15 security/py-sslstrip: Uses deprecated version of python 2020-08-15 security/py-volatility: Uses deprecated version of python 2020-08-15 sysutils/py-analyzemft: Uses deprecated version of python 2020-08-15 sysutils/py-cdmi: Uses deprecated version of python 2020-08-15 sysutils/py-ezjailremote: Uses deprecated version of python 2020-08-15 sysutils/py-gmailfs-fuse: Uses deprecated version of python 2020-08-15 sysutils/py-ploy_ec2: Uses deprecated version of python 2020-08-15 sysutils/py-ploy_fabric: Uses deprecated version of python 2020-08-15 sysutils/py-scriptine: Uses deprecated version of python 2020-08-15 sysutils/py-superlance: Uses deprecated version of python 2020-08-15 textproc/py-bugzillatools: Uses deprecated version of python 2020-08-15 textproc/py-elib.intl: Uses deprecated version of python 2020-08-15 textproc/py-errorhandler: Uses deprecated version of python 2020-08-15 textproc/py-hyperestraier-python: Uses deprecated version of python 2020-08-15 textproc/py-pyes: Uses deprecated version of python 2020-08-15 textproc/py-pyhwp: Uses deprecated version of python 2020-08-15 textproc/py-sphinx_numfig: Uses deprecated version of python 2020-08-15 www/py-HTMLgen: Uses deprecated version of python 2020-08-15 www/py-albatross: Uses deprecated version of python 2020-08-15 www/py-amf: Uses deprecated version of python 2020-08-15 www/py-apachelog: Uses deprecated version of python 2020-08-15 www/py-aws-requests-auth: Uses deprecated version of python 2020-08-15 www/py-clientform: Uses deprecated version of python 2020-08-15 www/py-django-appmedia: Uses deprecated version of python 2020-08-15 www/py-django-evolution: Uses deprecated version of python 2020-08-15 www/py-fedex: Uses deprecated version of python 2020-08-15 www/py-formalchemy: Uses deprecated version of python 2020-08-15 www/py-frappe-bench: Uses deprecated version of python 2020-08-15 www/py-funkload: Uses deprecated version of python 2020-08-15 www/py-goobook: Uses deprecated version of python 2020-08-15 www/py-poster: Uses deprecated version of python 2020-08-15 www/py-pyquery: Uses deprecated version of python 2020-08-15 www/py-pysearch: Uses deprecated version of python 2020-08-15 www/py-pywebdav: Uses deprecated version of python 2020-08-15 www/py-slimmer: Uses deprecated version of python 2020-08-15 www/py-surl: Uses deprecated version of python 2020-08-15 www/py-tmdb3: Uses deprecated version of python 2020-08-15 www/py-trello: Uses deprecated version of python 2020-08-15 www/py-uliweb: Uses deprecated version of python 2020-08-15 www/py-wsgiauth: Uses deprecated version of python 2020-08-15 x11-toolkits/py-wax: Uses deprecated version of python 2020-08-15 x11-toolkits/py-wxPython-common: Uses deprecated version of python 2020-08-15 x11-toolkits/py-wxPython28-common: Uses deprecated version of python
185 lines
4.2 KiB
Makefile
185 lines
4.2 KiB
Makefile
# $FreeBSD$
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#
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COMMENT = Biology
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SUBDIR += abyss
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SUBDIR += artemis
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SUBDIR += avida
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SUBDIR += babel
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SUBDIR += bamtools
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SUBDIR += bcftools
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SUBDIR += bedtools
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SUBDIR += bioawk
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SUBDIR += biococoa
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SUBDIR += bolt-lmm
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SUBDIR += bowtie
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SUBDIR += bowtie2
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SUBDIR += bwa
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SUBDIR += canu
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SUBDIR += cd-hit
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SUBDIR += cdbfasta
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SUBDIR += checkm
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SUBDIR += clustal-omega
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SUBDIR += clustalw
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SUBDIR += cufflinks
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SUBDIR += cytoscape
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SUBDIR += ddocent
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SUBDIR += diamond
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SUBDIR += dsr-pdb
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SUBDIR += emboss
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SUBDIR += exonerate
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SUBDIR += fasta
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SUBDIR += fasta3
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SUBDIR += fastahack
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SUBDIR += fastdnaml
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SUBDIR += fastool
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SUBDIR += fastp
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SUBDIR += fastqc
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SUBDIR += fasttree
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SUBDIR += fastx-toolkit
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SUBDIR += figtree
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SUBDIR += fluctuate
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SUBDIR += freebayes
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SUBDIR += garlic
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SUBDIR += gatk
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SUBDIR += gcta
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SUBDIR += gemma
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SUBDIR += gff2ps
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SUBDIR += gmap
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SUBDIR += gperiodic
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SUBDIR += graphlan
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SUBDIR += grappa
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SUBDIR += groopm
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SUBDIR += haplohseq
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SUBDIR += hhsuite
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SUBDIR += hisat2
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SUBDIR += hmmer
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SUBDIR += htslib
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SUBDIR += hyphy
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SUBDIR += igv
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SUBDIR += infernal
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SUBDIR += iolib
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SUBDIR += iqtree
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SUBDIR += jalview
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SUBDIR += jellyfish
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SUBDIR += kallisto
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SUBDIR += lagan
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SUBDIR += lamarc
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SUBDIR += libbigwig
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SUBDIR += libgtextutils
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SUBDIR += libsbml
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SUBDIR += linux-foldingathome
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SUBDIR += mafft
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SUBDIR += mapm3
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SUBDIR += migrate
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SUBDIR += minimap2
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SUBDIR += molden
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SUBDIR += mopac
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SUBDIR += mothur
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SUBDIR += mrbayes
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SUBDIR += mummer
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SUBDIR += muscle
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SUBDIR += ncbi-blast+
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SUBDIR += ncbi-cxx-toolkit
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SUBDIR += ncbi-toolkit
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SUBDIR += ngs-sdk
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SUBDIR += p5-AcePerl
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SUBDIR += p5-Bio-ASN1-EntrezGene
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SUBDIR += p5-Bio-Cluster
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SUBDIR += p5-Bio-Coordinate
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SUBDIR += p5-Bio-DB-EMBL
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SUBDIR += p5-Bio-DB-NCBIHelper
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SUBDIR += p5-Bio-Das
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SUBDIR += p5-Bio-Das-Lite
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SUBDIR += p5-Bio-FeatureIO
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SUBDIR += p5-Bio-GFF3
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SUBDIR += p5-Bio-Glite
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SUBDIR += p5-Bio-Graphics
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SUBDIR += p5-Bio-MAGETAB
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SUBDIR += p5-Bio-NEXUS
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SUBDIR += p5-Bio-Phylo
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SUBDIR += p5-Bio-SCF
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SUBDIR += p5-Bio-Variation
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SUBDIR += p5-BioPerl
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SUBDIR += p5-BioPerl-Run
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SUBDIR += p5-TrimGalore
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SUBDIR += p5-transdecoder
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SUBDIR += paml
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SUBDIR += pbbam
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SUBDIR += pbcopper
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SUBDIR += pbseqan
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SUBDIR += pear-merger
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SUBDIR += phrap
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SUBDIR += phred
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SUBDIR += phylip
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SUBDIR += phyml
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SUBDIR += picard-tools
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SUBDIR += plink
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SUBDIR += primer3
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SUBDIR += prodigal
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SUBDIR += prodigy-lig
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SUBDIR += protomol
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SUBDIR += psi88
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SUBDIR += py-Genesis-PyAPI
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SUBDIR += py-biopython
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SUBDIR += py-bx-python
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SUBDIR += py-cutadapt
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SUBDIR += py-dnaio
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SUBDIR += py-ete3
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SUBDIR += py-fastTSNE
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SUBDIR += py-gffutils
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SUBDIR += py-gtfparse
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SUBDIR += py-hits
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SUBDIR += py-loompy
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SUBDIR += py-macs2
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SUBDIR += py-multiqc
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SUBDIR += py-orange3-bioinformatics
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SUBDIR += py-orange3-single-cell
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SUBDIR += py-pandas-charm
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SUBDIR += py-pyfaidx
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SUBDIR += py-pysam
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SUBDIR += py-scikit-bio
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SUBDIR += py-xenaPython
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SUBDIR += pyfasta
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SUBDIR += python-nexus
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SUBDIR += rainbow
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SUBDIR += recombine
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SUBDIR += ruby-bio
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SUBDIR += rubygem-bio
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SUBDIR += rubygem-bio-executables
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SUBDIR += rubygem-bio-old-biofetch-emulator
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SUBDIR += rubygem-bio-shell
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SUBDIR += samtools
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SUBDIR += scrm
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SUBDIR += seaview
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SUBDIR += seqan
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SUBDIR += seqan-apps
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SUBDIR += seqan1
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SUBDIR += seqio
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SUBDIR += seqtk
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SUBDIR += sim4
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SUBDIR += slclust
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SUBDIR += smithwaterman
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SUBDIR += stacks
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SUBDIR += star
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SUBDIR += stringtie
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SUBDIR += subread
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SUBDIR += tRNAscan-SE
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SUBDIR += tabixpp
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SUBDIR += tophat
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SUBDIR += treekin
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SUBDIR += treepuzzle
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SUBDIR += trimadap
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SUBDIR += trimmomatic
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SUBDIR += ugene
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SUBDIR += vcflib
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SUBDIR += vcftools
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SUBDIR += velvet
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SUBDIR += viennarna
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SUBDIR += vsearch
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SUBDIR += vt
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SUBDIR += wise
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.include <bsd.port.subdir.mk>
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