18 lines
597 B
Plaintext
18 lines
597 B
Plaintext
[
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{ type: install
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message: <<EOM
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HMMER reads three optional environment variables:
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HMMERDB - directory location of HMM databases (e.g. PFAM)
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BLASTDB - directory location of FASTA-formatted sequence databases
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BLASTMAT - directory location of PAM scoring matrices
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The BLASTDB and BLASTMAT variables are shared with versions of BLAST such
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as NCBI BLAST 2.0 (contained in the biology/ncbi-toolkit port). If these
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variables are set, you do not have to specify the full path to your
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databases on the command line when using HMMER.
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Please see the documentation for more information.
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EOM
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}
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]
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