Frederic Culot 417a7b673b - Update to 0.52 [1] ... - Capitalize names (Perl) in COMMENT PR: ports/176003 [1] Submitted by: Gea-Suan Lin <gslin@gslin.org>		2013-02-16 14:58:51 +00:00
..
adun	- reset MAINTAINER	2012-06-26 05:44:19 +00:00
ariadne	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
artemis	Decommissioning java 1.5 (EOLed since October 2009):	2012-12-10 11:25:27 +00:00
avida	Update to version 2.12.4	2012-10-30 17:53:39 +00:00
babel	- Mark conflict with science/openbabel	2012-12-11 14:24:51 +00:00
biococoa	- cleanup comments	2012-10-13 13:39:56 +00:00
biojava	Remove hardcoded extract dependency on diablo-jdk16, directly use USE_ZIP	2012-12-11 07:26:38 +00:00
blast	- Take maintainership	2012-10-01 14:55:55 +00:00
blat	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
boinc-simap	Take over maintainership.	2012-12-28 21:59:42 +00:00
chemeq
clustalw
consed
crux	Does not build on powerpc-9: error in pthreads.	2011-11-10 14:30:51 +00:00
dotter	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
embassy	- Take maintainership	2012-10-01 14:55:55 +00:00
emboss	- Take maintainership	2012-10-01 14:55:55 +00:00
fasta
fasta3	- Take maintainership	2012-10-01 14:55:55 +00:00
fastdnaml
finchtv	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
fluctuate
garlic	Fix typos in COMMENT	2012-07-25 06:32:06 +00:00
genpak	- update png to 1.5.10	2012-06-01 05:26:28 +00:00
gff2ps	- Update MASTER_SITES and WWW: line	2012-02-19 23:24:52 +00:00
gmap
gperiodic	- update png to 1.5.10	2012-06-01 05:26:28 +00:00
grappa
hmmer	- Take maintainership	2012-10-01 14:55:55 +00:00
iolib	- Remove WITH_FBSD10_FIX, is no longer needed	2011-11-09 15:26:04 +00:00
jalview	Decommissioning java 1.5 (EOLed since October 2009):	2012-12-10 11:25:27 +00:00
lagan	- Update to version 2.0	2012-11-15 07:04:29 +00:00
lamarc	- Fix build with clang	2012-12-03 11:27:47 +00:00
libgenome
libsbml
linux-foldingathome
mafft	Mark as broken on sparc64: depends on thread-local storage, which is not	2012-09-08 08:30:39 +00:00
mapm3
migrate
molden	Update to 5.0.4	2012-12-14 17:47:16 +00:00
mopac
mrbayes
mummer	- Update to 3.23	2012-01-17 00:51:39 +00:00
muscle	Fix typos in COMMENT	2012-07-24 07:19:21 +00:00
ncbi-toolkit	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
njplot	s/X11BASE/LOCALBASE/, or equivalent.	2012-06-24 21:53:38 +00:00
ortep3
p5-AcePerl	- Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or	2012-06-10 18:42:48 +00:00
p5-Bio-ASN1-EntrezGene
p5-Bio-Das	Cleanup supporting perl version 5.8 and 5.10,	2012-12-17 15:39:36 +00:00
p5-Bio-Das-Lite
p5-Bio-GFF3	- Update to 1.5	2012-12-16 04:22:15 +00:00
p5-Bio-Glite	- Reset maintainer to perl@	2012-10-30 02:03:29 +00:00
p5-Bio-Graphics	- Update to 2.32	2013-01-24 14:36:55 +00:00
p5-Bio-MAGETAB	- Update to 1.27	2013-02-05 14:45:14 +00:00
p5-Bio-NEXUS	- Update to 0.78	2012-02-11 02:04:41 +00:00
p5-Bio-Phylo	- Update to 0.52 [1]	2013-02-16 14:58:51 +00:00
p5-Bio-SCF	At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450	2012-01-21 17:40:15 +00:00
p5-bioperl	- Take maintainership	2012-10-01 14:55:55 +00:00
p5-bioperl-run	- Remove SITE_PERL from *_DEPENDS	2012-06-30 14:53:22 +00:00
paml
phd2fasta
phrap
phred
phylip
phyml	- Update to 20121109.	2013-02-04 10:07:30 +00:00
platon
plink	Add new ports biology/plink [1] and biology/plinkseq [2]:	2012-09-27 09:59:25 +00:00
plinkseq	Add new ports biology/plink [1] and biology/plinkseq [2]:	2012-09-27 09:59:25 +00:00
povchem	- remove empty files	2013-02-15 08:57:19 +00:00
primer3	- Take maintainership	2012-10-01 14:55:55 +00:00
protomol	Switch from libglut to freeglut and retire libglut. Libglut hasn't been	2012-08-04 22:52:02 +00:00
psi88
py-biopython	- update to 1.60	2012-09-25 08:06:42 +00:00
pycogent	- Update to 1.5.3	2012-10-08 03:17:02 +00:00
pyfasta	- Update to 0.4.5	2012-02-23 13:43:25 +00:00
pymol	Switch from libglut to freeglut and retire libglut. Libglut hasn't been	2012-08-04 22:52:02 +00:00
python-nexus	- Update to 0.87	2011-12-23 08:05:00 +00:00
rasmol
recombine
ruby-bio
seaview	Bump PORTREVISION after DESKTOP_ENTRIES update	2013-01-23 15:00:18 +00:00
seqan	Replace USE_GCC=4.4+ by USE_GCC=4.6+ since GCC 4.4 is on its way out.	2012-07-21 22:20:32 +00:00
seqio
sim4
ssaha	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
t_coffee	- Update to 9.03.	2013-01-14 08:04:38 +00:00
tinker	- Update to version 6.1.01	2012-12-01 00:00:43 +00:00
treepuzzle
treeviewx	- Reassign to the heap at maintainer's request	2012-10-01 14:45:16 +00:00
tRNAscan-SE
velvet
wise
xdrawchem	- Strip header at request of original creator	2013-01-27 05:55:20 +00:00
xmolwt	- Support CC properly	2012-12-07 22:22:06 +00:00
Makefile	2012-11-26 benchmarks/gsbench: No more public distfiles	2012-11-28 09:05:54 +00:00