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freebsd-ports/biology
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Cheng-Lung Sung 3e9ed050ec Add gmap 2006.04.21, a Genomic Mapping and Alignment Program for mRNA 
and EST Sequences.

PR:		ports/103651
Submitted by:	Bob Zimmermann <rpz at cse.wustl.edu>
2006-09-29 04:05:55 +00:00
..
ariadne Remove USE_REINPLACE from all categories starting with B 2006-05-03 23:26:35 +00:00
artemis
avida Mark as broken for i386 4.x 2006-08-10 23:02:49 +00:00
babel
belvu Schedule these broken ports for termination on 2006-12-01 2006-09-02 16:51:10 +00:00
biojava Schedule these broken ports for termination on 2006-12-01 2006-09-02 16:51:10 +00:00
blast - Update PORTREVISION to match latest release (see main web site) 2006-06-11 09:13:43 +00:00
blat Add blat 33, a fast tool for local sequence similarity searches. 2006-03-15 10:26:12 +00:00
boinc-simap - Update to 5.10 2006-07-17 21:44:52 +00:00
chemeq
clustalw
coalesce
crimap Remove USE_REINPLACE from all categories starting with B 2006-05-03 23:26:35 +00:00
distribfold USE_SIZE was obsoleted in rev. 1.484 of bsd.port.mk more than 2006-06-11 15:29:01 +00:00
dna-qc Remove USE_REINPLACE from all categories starting with B 2006-05-03 23:26:35 +00:00
dotter Unmark BROKEN, it seems to be caused by a stale distfile on ftp-master. 2006-08-03 20:28:00 +00:00
embassy For EMBOSS: 2006-03-31 09:43:21 +00:00
emboss For EMBOSS: 2006-03-31 09:43:21 +00:00
fasta Update to 21.u1.d1 (fixes fetch). 2006-05-07 13:04:20 +00:00
fasta3 - Update to 34.t25.d9 2006-06-09 19:18:08 +00:00
fastdnaml
finchtv
fluctuate
garlic Remove USE_REINPLACE from all categories starting with B 2006-05-03 23:26:35 +00:00
genpak
gff2ps Remove USE_REINPLACE from all categories starting with B 2006-05-03 23:26:35 +00:00
gmap Add gmap 2006.04.21, a Genomic Mapping and Alignment Program for mRNA 2006-09-29 04:05:55 +00:00
gperiodic Remove USE_REINPLACE from all categories starting with B 2006-05-03 23:26:35 +00:00
grappa Remove USE_REINPLACE from all categories starting with B 2006-05-03 23:26:35 +00:00
hmmer
jalview Jalview is a multiple alignment editor written in Java. It is used widely in a 2006-02-13 09:42:13 +00:00
kinemage Reset jeremy@external.org who has not responded to email asking about 2006-04-05 05:46:33 +00:00
L-Breeder Remove USE_REINPLACE from all categories starting with B 2006-05-03 23:26:35 +00:00
lagan Add lagan 1.2, efficient tools for large-scale multiple alignments of 2006-03-16 22:31:26 +00:00
lamarc
libgenome - s,INSTALLS_SHLIB,USE_LDCONFIG,g 2006-08-14 10:08:25 +00:00
linux-foldingathome Folding@Home is a distributed computing project -- people from through out the 2006-08-28 22:33:45 +00:00
lsysexp - Add MASTER_SITE 2006-06-06 10:07:55 +00:00
mafft - Update to 5.743 2006-03-19 12:59:16 +00:00
migrate Remove USE_REINPLACE from all categories starting with B 2006-05-03 23:26:35 +00:00
molden Unbreak: molden has been updated on Aug 17, with the same DISTNAME. 2006-09-17 13:41:56 +00:00
mopac - Fix pkg-plist [1] 2006-07-10 05:32:58 +00:00
nab
ncbi-toolkit Update biology/ncbi-toolkit to the latest release. 2006-06-06 12:05:19 +00:00
ortep3 Reset rmiya@cc.hirosaki-u.ac.jp who has not responded to email asking about 2006-04-05 06:13:46 +00:00
p5-AcePerl - Update to 1.89 2006-05-02 23:16:02 +00:00
p5-Bio-ASN1-EntrezGene
p5-Bio-Das
p5-Bio-Phylo - Updated from 0.07 to 0.12 2006-05-19 23:18:32 +00:00
p5-bioperl
p5-bioperl-devel
p5-bioperl-run Bioperl-run contain modules that provides a PERL interface to various 2006-05-02 21:30:08 +00:00
p5-bioperl-run-devel Bioperl-run contain modules that provides a PERL interface to various 2006-05-02 21:31:43 +00:00
paml - Update to 3.15 2006-05-20 18:52:19 +00:00
phylip Put PORTEPOCH back. 2006-02-09 01:17:59 +00:00
platon - Satisfy portlint 2006-05-06 21:20:59 +00:00
povchem Remove USE_REINPLACE from all categories starting with B 2006-05-03 23:26:35 +00:00
primer3 Remove USE_REINPLACE from all categories starting with B 2006-05-03 23:26:35 +00:00
protomol Add protomol 2.0.3, OO, component based, framework for molecular 2006-05-05 20:09:54 +00:00
psi88 Reset rmiya@cc.hirosaki-u.ac.jp who has not responded to email asking about 2006-04-05 06:13:46 +00:00
py-biopython
pymol Fix build on amd64 2006-09-17 11:51:56 +00:00
rasmol
recombine
ruby-bio - Update to 1.0.0 2006-04-25 22:09:29 +00:00
seaview - Update to 2006.02.13 2006-04-05 01:58:03 +00:00
seqio
sim4 Remove USE_REINPLACE from all categories starting with B 2006-05-03 23:26:35 +00:00
t_coffee Update to 3.27. 2006-02-10 09:45:28 +00:00
tinker Remove USE_REINPLACE from all categories starting with B 2006-05-03 23:26:35 +00:00
treepuzzle
treeviewx
tRNAscan-SE
wise Remove USE_REINPLACE from all categories starting with B 2006-05-03 23:26:35 +00:00
xdrawchem Mark as BROKEN on sparc64 due to internal compiler error. 2006-07-03 22:22:09 +00:00
xmolwt Reset rmiya@cc.hirosaki-u.ac.jp who has not responded to email asking about 2006-04-05 06:13:46 +00:00
Makefile Add gmap 2006.04.21, a Genomic Mapping and Alignment Program for mRNA 2006-09-29 04:05:55 +00:00