Antoine Brodin bc40094c13 Mark BROKEN: wrong LIB_DEPENDS		2018-09-27 05:26:32 +00:00
..
2d-rewriter
abinit
afni	Add DOCS options to ports that should have one.	2018-09-10 13:14:50 +00:00
aircraft-datcom	Add DOCS options to ports that should have one.	2018-09-10 13:14:50 +00:00
ALPSCore	Update science/hdf5 to 1.10.2	2018-09-05 22:05:23 +00:00
antioch	Upgrade these ports to USES=compiler:c++11-lang to fix build on gcc-based	2018-09-18 09:28:34 +00:00
atom	science/atom: Corrections	2018-09-04 16:42:27 +00:00
atompaw	science/atompaw: Update 4.1.0.3 -> 4.1.0.4	2018-09-20 15:00:46 +00:00
avogadro	Change x11/xorgproto to become a build dep	2018-09-11 18:34:27 +00:00
bagel	science/bagel: Correction	2018-09-25 19:57:58 +00:00
bddsolve	Fix build on gcc-based archs by updating USES.	2018-09-22 05:30:31 +00:00
bft
bodr
brian
buddy
cdcl	Add EXAMPLES options to ports that should have one.	2018-09-10 13:15:47 +00:00
cdf
cdo	Update science/hdf5 to 1.10.2	2018-09-05 22:05:23 +00:00
cgnslib	After an include, PLIST_SUB must be appended to, not overwritten.	2018-09-10 13:11:23 +00:00
cgribex
checkmol
chemical-mime-data
chemps2	Update science/hdf5 to 1.10.2	2018-09-05 22:05:23 +00:00
chemtool
chemtool-devel
chrono	Update science/hdf5 to 1.10.2	2018-09-05 22:05:23 +00:00
clhep	Previous commit unbroke on powerpc64.	2018-09-18 08:21:26 +00:00
clipper	science/clipper: Update 2.1.20180526 -> 2.1.20180802	2018-09-27 03:50:55 +00:00
colt
coot
cp2k	science/cp2k: Change from net/mpich2 -> net/mpich	2018-09-23 00:25:19 +00:00
crf++	science/crf++: Fix build with Clang 6	2018-09-01 10:29:11 +00:00
dalton	science/dalton: Fix license.	2018-09-02 07:53:31 +00:00
datawarrior	New port: science/datawarrior: Chemistry-aware multi-purpose data visualization and analysis program	2018-08-27 06:15:56 +00:00
dcl
devisor
dft_tools	Mark BROKEN: wrong LIB_DEPENDS	2018-09-27 05:26:32 +00:00
dftbplus	Change 20 ports from net/mpich2 to net/mpich	2018-09-22 16:36:38 +00:00
dkh
dlib-cpp	Set MAINTAINER of mine ports to @FreeBSD.org email.	2018-08-09 14:24:37 +00:00
dlpoly-classic
eccodes	Update MASTER_SITES and WWW	2018-09-06 18:23:25 +00:00
ecs	Update science/hdf5 to 1.10.2	2018-09-05 22:05:23 +00:00
elk	New port: science/elk: All-electron full-potential linearised augmented-planewave code	2018-09-23 08:43:32 +00:00
epte
erd
fastcap
fasthenry
fisicalab	Update Objective-C LLVM version to 6.0.	2018-09-26 15:23:37 +00:00
fleur	Change 20 ports from net/mpich2 to net/mpich	2018-09-22 16:36:38 +00:00
fsom
fvcom
fvcom-mpi
fvm	Update science/hdf5 to 1.10.2	2018-09-05 22:05:23 +00:00
gabedit	Change x11/xorgproto to become a build dep	2018-09-11 18:34:27 +00:00
gchemutils
gdma
getdp	- Update to 3.0.2.	2018-09-11 14:51:17 +00:00
ghemical	science/libint: Update 1.1.6 -> 1.2.1	2018-08-27 22:56:43 +00:00
ghmm
gnudatalanguage	Update science/hdf5 to 1.10.2	2018-09-05 22:05:23 +00:00
gramps
grib_api	Update to 1.27.0	2018-09-06 18:23:31 +00:00
gromacs	Change 20 ports from net/mpich2 to net/mpich	2018-09-22 16:36:38 +00:00
gsmc
gtamsanalyzer	Update Objective-C LLVM version to 6.0.	2018-09-26 15:23:37 +00:00
gwyddion	Update ilmbase and openexr to 2.3.0, rename OpenEXR to openexr.	2018-09-22 10:15:22 +00:00
h5utils	Update science/hdf5 to 1.10.2	2018-09-05 22:05:23 +00:00
harminv
hdf
hdf5	Update science/hdf5 to 1.10.2	2018-09-05 22:05:23 +00:00
hdf5-18
hypre	science/hypre: Change from net/mpich2 to net/mpich	2018-09-23 18:48:21 +00:00
iboview	Change x11/xorgproto to become a build dep	2018-09-11 18:34:27 +00:00
InsightToolkit	Update science/hdf5 to 1.10.2	2018-09-05 22:05:23 +00:00
isaac-cfd
jdftx	Change 20 ports from net/mpich2 to net/mpich	2018-09-22 16:36:38 +00:00
jstrack	Add DOCS options to ports that should have one.	2018-09-10 13:14:50 +00:00
kalzium	Add DOCS options to ports that should have one.	2018-09-10 13:14:50 +00:00
kalzium-kde4	Deprecate KDE4 software in categories graphics-textproc.	2018-08-30 18:23:24 +00:00
kst2	Fix build with Qt 5.11	2018-08-31 08:57:17 +00:00
lammps	New port: science/lammps: Classical molecular dynamics code with a focus on materials modeling	2018-09-06 06:31:27 +00:00
lamprop
libaec
libccp4
libcint
libctl
libefp
libgeodecomp	devel/boost-*: update to 1.68.0	2018-08-09 06:58:30 +00:00
libghemical	science/libint: Update 1.1.6 -> 1.2.1	2018-08-27 22:56:43 +00:00
libgridxc	Change 20 ports from net/mpich2 to net/mpich	2018-09-22 16:36:38 +00:00
libint	science/libint: PORTSCOUT=limit	2018-08-30 17:24:44 +00:00
libint2	science/libint2: Add configure options needed for depending ports; Add STATIC port option	2018-08-29 03:54:05 +00:00
libkml	devel/google{test,mock}: update to 1.8.1	2018-08-31 20:14:40 +00:00
liblinear
liboglappth
libquantum
libssm
libsvm
libsvm-python
libxc
linsmith
lm	Change 20 ports from net/mpich2 to net/mpich	2018-09-22 16:36:38 +00:00
luscus	New port: science/luscus: Molecular editor and viewer	2018-09-14 07:44:45 +00:00
madness	Change 20 ports from net/mpich2 to net/mpich	2018-09-22 16:36:38 +00:00
massxpert
mbdyn
mcstas
mcstas-comps
mcxtrace
mcxtrace-comps
mdynamix	Change 20 ports from net/mpich2 to net/mpich	2018-09-22 16:36:38 +00:00
medit
meep	Update science/hdf5 to 1.10.2	2018-09-05 22:05:23 +00:00
mei
metaf2xml
metaphysicl	science/metaphysicl: Update 0.3.0 -> 0.3.0.1	2018-09-08 15:21:32 +00:00
minc2	Update science/hdf5 to 1.10.2	2018-09-05 22:05:23 +00:00
mmdb2
mol2ps
MOOSE-neural-simulator	Update science/hdf5 to 1.10.2	2018-09-05 22:05:23 +00:00
mpb	Update science/hdf5 to 1.10.2	2018-09-05 22:05:23 +00:00
mpqc	science/mpqc: Add -lmpich to LDFLAGS: this fixes science/libghemical build	2018-09-07 02:23:54 +00:00
msms	science/msms: Add back NO_WRKSUBDIR	2018-09-10 07:09:49 +00:00
multiwfn	Fix typo in version.	2018-08-27 13:51:29 +00:00
namd	science/namd: Remove RESTRICTED because LICENSE_PERMS is restrictive	2018-09-10 06:59:36 +00:00
ncs	Update science/hdf5 to 1.10.2	2018-09-05 22:05:23 +00:00
netcdf	Update science/hdf5 to 1.10.2	2018-09-05 22:05:23 +00:00
netcdf-cxx
netcdf-fortran
nifticlib
nwchem	Change 20 ports from net/mpich2 to net/mpich	2018-09-22 16:36:38 +00:00
octopus	New port: science/octopus: Scientific program aimed at the ab initio virtual experimentation	2018-08-24 17:54:03 +00:00
openbabel
openkim
openmx	Change 20 ports from net/mpich2 to net/mpich	2018-09-22 16:36:38 +00:00
openstructure	Change x11/xorgproto to become a build dep	2018-09-11 18:34:27 +00:00
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR	Remove MASTER_SITE_SUBDIR	2018-09-10 20:27:04 +00:00
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit
paje	Update Objective-C LLVM version to 6.0.	2018-09-26 15:23:37 +00:00
paraview	Change x11/xorgproto to become a build dep	2018-09-11 18:34:27 +00:00
pcmsolver
PETSc	Change 10 ports from net/mpich2 to net/mpich	2018-09-22 17:40:41 +00:00
pnetcdf	Change from MPICH2 to MPICH option	2018-09-24 11:14:24 +00:00
psychopy
pulseview	devel/boost-*: update to 1.68.0	2018-08-09 06:58:30 +00:00
py-abipy	science/py-abipy: Update 0.5.0 -> 0.6.0	2018-08-24 18:31:51 +00:00
py-ase	Never use ${FLAVOR} directly in dependencies, FLAVOR is not transitive.	2018-09-14 12:19:48 +00:00
py-cdo	Update to 1.4.0	2018-09-20 19:27:39 +00:00
py-chempy	science/py-chempy: python2 is deprecated for this version of chempy.	2018-09-21 17:59:14 +00:00
py-coards
py-DendroPy
py-dlib	Set MAINTAINER of mine ports to @FreeBSD.org email.	2018-08-09 14:24:37 +00:00
py-gpaw	Change 20 ports from net/mpich2 to net/mpich	2018-09-22 16:36:38 +00:00
py-gsd	science/py-gsd: Update 1.5.2 -> 1.5.3	2018-08-28 15:46:05 +00:00
py-h5py	Update science/hdf5 to 1.10.2	2018-09-05 22:05:23 +00:00
py-hcluster
py-kinematics
py-MDAnalysis
py-MDAnalysisTests
py-mdp
py-mlpy
py-mmtf-python
py-molmod	New port: science/py-molmod: Collection of molecular modelling tools for python	2018-09-14 03:10:59 +00:00
py-netCDF4	Update science/hdf5 to 1.10.2	2018-09-05 22:05:23 +00:00
py-obspy
py-OpenFermion
py-openpiv
py-paida
py-phono3py	New port: science/py-phono3py: Software to calculate phonon-phonon interaction and related properties	2018-09-14 05:37:12 +00:00
py-phonopy	New port: science/py-phonopy: Package for phonon calculations at harmonic and quasi-harmonic levels	2018-09-14 05:01:18 +00:00
py-pupynere
py-pyaixi
py-pydicom
py-PyFR	science/py-PyFR: Update dependencies: move one under the option option, add another one	2018-09-22 06:25:19 +00:00
py-pymatgen	science/py-pymatgen: Update 2018.8.10 -> 2018.9.1	2018-09-17 20:29:11 +00:00
py-pymol	science/py-pymol: Update 2.1.0 -> 2.2.0	2018-09-17 20:48:45 +00:00
py-pyosf
py-PyQuante
py-pysal
py-pyteomics
py-pyteomics.biolccc
py-qspin
py-quantities
py-rmf	science/py-rmf: Correct version	2018-08-30 17:34:27 +00:00
py-ScientificPython
py-scikit-fuzzy
py-scikit-learn
py-scikit-sparse
py-scimath
py-scipy
py-scoria
py-SimpleSpectral
py-spglib	science/py-spglib: Update 1.10.4.1 -> 1.10.4.11	2018-09-19 18:35:55 +00:00
py-veusz
py-ws2300
pybrain
pycdf
pynn
qbox	Change 20 ports from net/mpich2 to net/mpich	2018-09-22 16:36:38 +00:00
qcl
qmcpack	Change 20 ports from net/mpich2 to net/mpich	2018-09-22 16:36:38 +00:00
qtresistors
quantum-espresso	Change 20 ports from net/mpich2 to net/mpich	2018-09-22 16:36:38 +00:00
qwalk	science/qwalk: Add PORTSCOUT=limit	2018-08-30 17:50:38 +00:00
R-cran-AMORE
R-cran-bayesm
R-cran-cmprsk
R-cran-DCluster
R-cran-e1071	- Update to 1.7-0	2018-08-10 10:00:35 +00:00
R-cran-eco
R-cran-Epi	- Update to 2.32	2018-08-27 02:22:54 +00:00
R-cran-epicalc
R-cran-etm	- Update to 1.0.4	2018-08-20 09:30:52 +00:00
R-cran-fastICA
R-cran-kernlab	- Update to 0.9-27	2018-08-13 08:44:29 +00:00
R-cran-snow	- Update to 0.4-3	2018-09-18 06:51:54 +00:00
R-cran-som
R-cran-udunits2
rdkit	science/rdkit: Update 2018_03_3 -> 2018_03_4	2018-08-18 06:59:22 +00:00
rmf	Update science/hdf5 to 1.10.2	2018-09-05 22:05:23 +00:00
rubygem-ai4r
rubygem-cdo	Update to 1.4.0	2018-09-20 19:28:05 +00:00
rubygem-rgeo	Update to 1.1.1	2018-08-29 19:10:51 +00:00
rubygem-rgeo-geojson
rubygem-rgeo-proj4
rubygem-rgeo-shapefile
rubygem-ruby-dcl
rubygem-ruby-netcdf
siesta	New port: science/siesta: Program to perform efficient electronic structure calculations	2018-09-03 17:51:32 +00:00
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw	Add DOCS options to ports that should have one.	2018-09-10 13:14:50 +00:00
sigrok-firmware-utils	Add DOCS options to ports that should have one.	2018-09-10 13:14:50 +00:00
silo	Update science/hdf5 to 1.10.2	2018-09-05 22:05:23 +00:00
simlib
simsmith
spglib
step	Add DOCS options to ports that should have one.	2018-09-10 13:14:50 +00:00
step-kde4	Deprecate KDE4 software in categories graphics-textproc.	2018-08-30 18:23:24 +00:00
svmlight
szip
teem	New port: science/teem: Libraries for representing, processing and visualizing scientific data	2018-09-02 06:43:29 +00:00
tfel	devel/boost-*: update to 1.68.0	2018-08-09 06:58:30 +00:00
triqs	Mark BROKEN: wrong LIB_DEPENDS	2018-09-27 05:26:32 +00:00
udunits	Remove LICENSE_FILE from PORTDOCS	2018-08-31 14:41:13 +00:00
v_sim
vmd	science/vmd: Remove RESTRICTED: not required	2018-09-10 07:06:17 +00:00
voro++
wannier90	New port: science/wannier90: Maximally-localized Wannier functions (MLWFs) and Wannier90	2018-09-03 04:09:00 +00:00
xcrysden
xdrawchem	Change x11/xorgproto to become a build dep	2018-09-11 18:34:27 +00:00
xfce4-equake-plugin
xmakemol
Makefile	New port: science/bagel: Brilliantly Advanced General Electronic-structure Library	2018-09-25 18:11:34 +00:00