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adun
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ariadne
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. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
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2013-06-19 14:10:02 +00:00 |
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artemis
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Decommissioning java 1.5 (EOLed since October 2009):
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2012-12-10 11:25:27 +00:00 |
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avida
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- Fix build with clang
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2013-06-04 08:26:03 +00:00 |
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babel
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. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
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2013-06-19 19:01:47 +00:00 |
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biococoa
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- cleanup comments
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2012-10-13 13:39:56 +00:00 |
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biojava
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Remove hardcoded extract dependency on diablo-jdk16, directly use USE_ZIP
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2012-12-11 07:26:38 +00:00 |
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blast
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- Take maintainership
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2012-10-01 14:55:55 +00:00 |
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blat
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. remove pkg-plist (along with the previous commit).
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2013-06-19 18:44:32 +00:00 |
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boinc-simap
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Use bsd.port.options.mk instead of bsd.port.{pre|post}.mk
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2013-04-29 12:20:35 +00:00 |
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chemeq
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. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
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2013-06-19 20:01:30 +00:00 |
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clustalw
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consed
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crux
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- adoption of optionsNG
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2013-03-18 06:48:55 +00:00 |
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dotter
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- Mark broken checksum mismatch
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2013-03-25 01:41:31 +00:00 |
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embassy
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Convert from USE_MOTIF to USES=motif
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2013-07-09 21:49:35 +00:00 |
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emboss
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Convert from USE_MOTIF to USES=motif
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2013-07-09 21:49:35 +00:00 |
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fasta
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Fix some PORT_OPTIONS conversions
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2013-06-30 20:53:06 +00:00 |
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fasta3
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- Update to 36.3.6
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2013-07-19 14:08:02 +00:00 |
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fastdnaml
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. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
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2013-06-19 13:35:55 +00:00 |
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finchtv
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- Reassign to the heap at maintainer's request
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2012-10-01 14:45:16 +00:00 |
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fluctuate
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. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
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2013-06-19 12:43:28 +00:00 |
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garlic
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genpak
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gff2ps
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. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
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2013-06-19 18:56:37 +00:00 |
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gmap
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gperiodic
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. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
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2013-06-19 19:05:47 +00:00 |
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grappa
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hmmer
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- Convert to new perl framework
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2013-08-03 08:45:51 +00:00 |
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iolib
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- Update to 7.31.0
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2013-07-11 16:26:26 +00:00 |
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jalview
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Decommissioning java 1.5 (EOLed since October 2009):
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2012-12-10 11:25:27 +00:00 |
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lagan
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- Convert to new perl framework
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2013-08-03 13:44:00 +00:00 |
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lamarc
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. trim Makefile headers;
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2013-06-19 15:39:18 +00:00 |
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libgenome
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. add license (GPLv2);
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2013-06-19 18:53:54 +00:00 |
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libsbml
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- adoption of optionsNG
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2013-03-18 06:50:12 +00:00 |
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linux-foldingathome
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mafft
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Mark as broken on sparc64: depends on thread-local storage, which is not
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2012-09-08 08:30:39 +00:00 |
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mapm3
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migrate
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- Update to 3.5.1
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2013-05-26 07:49:47 +00:00 |
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molden
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- Update to 5.0.6
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2013-04-26 06:57:37 +00:00 |
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mopac
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. NOPORTEXAMPLES -> PORT_OPTIONS:MEXAMPLES;
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2013-06-19 18:38:46 +00:00 |
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mrbayes
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mummer
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muscle
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ncbi-toolkit
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Convert from USE_MOTIF to USES=motif
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2013-07-09 21:49:35 +00:00 |
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njplot
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Convert from USE_MOTIF to USES=motif
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2013-07-10 07:33:24 +00:00 |
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ortep3
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. introdice optionsNG to the port;
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2013-06-19 20:06:59 +00:00 |
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p5-AcePerl
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- Convert to new perl framework
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2013-08-02 18:52:07 +00:00 |
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p5-Bio-ASN1-EntrezGene
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p5-Bio-Das
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- Convert to new perl framework
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2013-08-02 18:52:07 +00:00 |
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p5-Bio-Das-Lite
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- Convert to new perl framework
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2013-08-02 18:52:07 +00:00 |
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p5-Bio-GFF3
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- Update to 1.6
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2013-08-01 13:15:48 +00:00 |
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p5-Bio-Glite
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- Convert to new perl framework
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2013-08-02 18:52:07 +00:00 |
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p5-Bio-Graphics
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- Convert to new perl framework
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2013-08-02 18:52:07 +00:00 |
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p5-Bio-MAGETAB
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- Convert to new perl framework
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2013-08-02 18:52:07 +00:00 |
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p5-Bio-NEXUS
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- Convert to new perl framework
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2013-08-02 18:52:07 +00:00 |
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p5-Bio-Phylo
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- Convert to new perl framework
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2013-08-02 18:52:07 +00:00 |
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p5-Bio-SCF
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- Convert to new perl framework
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2013-08-06 08:50:49 +00:00 |
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p5-bioperl
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- Convert to new perl framework
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2013-08-06 08:50:49 +00:00 |
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p5-bioperl-run
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paml
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- Trim Makefile headers
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2013-06-01 14:22:35 +00:00 |
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phd2fasta
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Remove unneeded escaping
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2013-04-26 16:23:13 +00:00 |
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phrap
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phred
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phylip
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Fix some screw ups introduced in r319847.
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2013-06-24 18:09:52 +00:00 |
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phyml
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- Update to 20121109.
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2013-02-04 10:07:30 +00:00 |
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platon
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plink
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Add new ports biology/plink [1] and biology/plinkseq [2]:
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2012-09-27 09:59:25 +00:00 |
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plinkseq
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Fix build with protobuf-2.5.0
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2013-03-21 14:09:22 +00:00 |
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povchem
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- remove empty files
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2013-02-15 08:57:19 +00:00 |
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primer3
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- Take maintainership
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2012-10-01 14:55:55 +00:00 |
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protomol
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- adoption of optionsNG
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2013-03-18 06:54:39 +00:00 |
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psi88
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. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
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2013-06-19 19:54:13 +00:00 |
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py-biopython
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- update to 1.60
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2012-09-25 08:06:42 +00:00 |
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pycogent
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- Update to 1.5.3
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2012-10-08 03:17:02 +00:00 |
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pyfasta
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- Trim Makefile headers
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2013-06-01 14:22:35 +00:00 |
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pymol
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python-nexus
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rasmol
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Convert to USES=imake
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2013-06-28 18:32:25 +00:00 |
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recombine
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. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
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2013-06-19 19:15:14 +00:00 |
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ruby-bio
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- adoption of optionsNG
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2013-03-18 06:55:42 +00:00 |
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seaview
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- Update to 4.4.2
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2013-07-15 14:49:02 +00:00 |
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seqan
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- convert USE_CMAKE to USES
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2013-03-22 20:06:14 +00:00 |
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seqio
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Remove stale (since r321246) pkg-plist file.
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2013-06-19 21:04:36 +00:00 |
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sim4
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. add license (GPLv2);
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2013-06-19 16:36:53 +00:00 |
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ssaha
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- Reassign to the heap at maintainer's request
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2012-10-01 14:45:16 +00:00 |
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t_coffee
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- Update to 9.03.
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2013-01-14 08:04:38 +00:00 |
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tinker
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- Update to 6.2.06
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2013-07-15 14:50:22 +00:00 |
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treepuzzle
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treeviewx
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- Reassign to the heap at maintainer's request
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2012-10-01 14:45:16 +00:00 |
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tRNAscan-SE
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- Convert to new perl framework
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2013-08-03 08:45:51 +00:00 |
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ugene
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Unbreak on 7.X and i386 systems.
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2013-02-25 13:00:15 +00:00 |
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velvet
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wise
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- Convert to new perl framework
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2013-08-03 13:44:00 +00:00 |
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xmolwt
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Use optionsNG for DOCS.
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2013-06-19 19:07:35 +00:00 |
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Makefile
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KDE3 and QT3 expired on 2013-07-01, remove these ports.
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2013-07-26 19:19:20 +00:00 |
