| .. |
|
ariadne
|
|
|
|
artemis
|
|
|
|
avida
|
|
|
|
babel
|
|
|
|
bcftools
|
|
|
|
bedtools
|
|
|
|
biococoa
|
|
|
|
blat
|
|
|
|
bowtie
|
Multiple ports:
|
2018-01-31 01:07:07 +00:00 |
|
bowtie2
|
|
|
|
bwa
|
Multiple ports:
|
2018-01-31 01:07:07 +00:00 |
|
canu
|
devel/boost-*: update to 1.66.0
|
2018-01-18 04:11:02 +00:00 |
|
cd-hit
|
Multiple ports:
|
2018-01-31 01:07:07 +00:00 |
|
cdbfasta
|
Multiple ports:
|
2018-01-31 01:07:07 +00:00 |
|
chemeq
|
|
|
|
clustalw
|
|
|
|
consed
|
|
|
|
crux
|
|
|
|
diamond
|
biology/diamond: Update to version 0.9.17
|
2018-02-01 19:20:07 +00:00 |
|
emboss
|
|
|
|
fasta
|
|
|
|
fasta3
|
|
|
|
fastdnaml
|
|
|
|
fastool
|
Multiple ports:
|
2018-01-31 01:07:07 +00:00 |
|
fastqc
|
|
|
|
fasttree
|
|
|
|
fastx-toolkit
|
Multiple ports:
|
2018-01-31 01:07:07 +00:00 |
|
fluctuate
|
|
|
|
garlic
|
|
|
|
gff2ps
|
|
|
|
gmap
|
Multiple ports:
|
2018-01-31 01:07:07 +00:00 |
|
gperiodic
|
|
|
|
grappa
|
|
|
|
hmmer
|
|
|
|
htslib
|
|
|
|
iolib
|
|
|
|
iqtree
|
New USES=eigen
|
2018-01-02 16:49:24 +00:00 |
|
jalview
|
|
|
|
jellyfish
|
Multiple ports:
|
2018-01-31 01:07:07 +00:00 |
|
kallisto
|
|
|
|
lagan
|
|
|
|
lamarc
|
|
|
|
libgtextutils
|
Multiple ports:
|
2018-01-31 01:07:07 +00:00 |
|
libsbml
|
- Update to 5.16.0
|
2018-01-01 08:24:53 +00:00 |
|
linux-foldingathome
|
|
|
|
mafft
|
|
|
|
mapm3
|
|
|
|
migrate
|
|
|
|
molden
|
|
|
|
mopac
|
|
|
|
mrbayes
|
|
|
|
mummer
|
|
|
|
muscle
|
|
|
|
ncbi-blast+
|
Multiple ports:
|
2018-01-31 01:07:07 +00:00 |
|
ncbi-toolkit
|
|
|
|
njplot
|
|
|
|
p5-AcePerl
|
|
|
|
p5-Bio-ASN1-EntrezGene
|
|
|
|
p5-Bio-Coordinate
|
|
|
|
p5-Bio-Das
|
|
|
|
p5-Bio-Das-Lite
|
|
|
|
p5-Bio-FeatureIO
|
|
|
|
p5-Bio-GFF3
|
|
|
|
p5-Bio-Glite
|
|
|
|
p5-Bio-Graphics
|
|
|
|
p5-Bio-MAGETAB
|
|
|
|
p5-Bio-NEXUS
|
|
|
|
p5-Bio-Phylo
|
Update to 2.0.1
|
2017-12-26 23:20:28 +00:00 |
|
p5-Bio-SCF
|
|
|
|
p5-BioPerl
|
|
|
|
p5-BioPerl-Run
|
|
|
|
p5-transdecoder
|
Multiple ports:
|
2018-01-31 01:07:07 +00:00 |
|
p5-TrimGalore
|
|
|
|
paml
|
|
|
|
phrap
|
|
|
|
phred
|
|
|
|
phylip
|
- Update to 3.697
|
2018-01-01 08:40:22 +00:00 |
|
phyml
|
- Update to 3.3.20180129
|
2018-02-01 07:26:57 +00:00 |
|
plink
|
Multiple ports:
|
2018-01-31 01:07:07 +00:00 |
|
plinkseq
|
Multiple ports:
|
2018-01-31 01:07:07 +00:00 |
|
primer3
|
|
|
|
protomol
|
|
|
|
psi88
|
|
|
|
py-biom-format
|
|
|
|
py-biopython
|
Reduce dependency on the python2 metaport
|
2018-02-19 11:10:43 +00:00 |
|
py-bx-python
|
biology/py-bx-python: Update to 0.8.1
|
2018-02-10 00:09:56 +00:00 |
|
py-cutadapt
|
Canonicalize PyPi WWWs:
|
2018-02-08 20:18:08 +00:00 |
|
py-macs2
|
|
|
|
py-pysam
|
biology/py-pysam: Update to 0.14
|
2018-02-10 23:01:37 +00:00 |
|
pycogent
|
|
|
|
pyfasta
|
|
|
|
python-nexus
|
|
|
|
recombine
|
|
|
|
ruby-bio
|
|
|
|
rubygem-bio
|
|
|
|
samtools
|
|
|
|
seaview
|
biology/seaview: Update version 4.6.2=>4.6.3
|
2018-01-05 17:40:41 +00:00 |
|
seqan
|
|
|
|
seqan1
|
|
|
|
seqan-apps
|
devel/boost-*: update to 1.66.0
|
2018-01-18 04:11:02 +00:00 |
|
seqio
|
|
|
|
seqtools
|
|
|
|
sim4
|
|
|
|
slclust
|
Multiple ports:
|
2018-01-31 01:07:07 +00:00 |
|
ssaha
|
|
|
|
t_coffee
|
|
|
|
tinker
|
|
|
|
treepuzzle
|
|
|
|
trimmomatic
|
Multiple ports:
|
2018-01-31 01:07:07 +00:00 |
|
tRNAscan-SE
|
|
|
|
ugene
|
Update Qt5 ports to 5.9.3.
|
2018-01-06 21:30:31 +00:00 |
|
vcftools
|
Multiple ports:
|
2018-01-31 01:07:07 +00:00 |
|
velvet
|
- Convert to option helper install target (add OPTIONS_DEFINE=DOCS
|
2018-01-11 18:09:00 +00:00 |
|
wise
|
|
|
|
xmolwt
|
|
|
|
Makefile
|
|
|
