165 lines
4.7 KiB
Makefile
165 lines
4.7 KiB
Makefile
PORTNAME= afni
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DISTVERSIONPREFIX= AFNI_
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DISTVERSION= 23.0.01
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CATEGORIES= science biology graphics perl5 python
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MAINTAINER= fernape@FreeBSD.org
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COMMENT= Advanced Functional Neuro Imaging
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WWW= https://afni.nimh.nih.gov/afni/
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LICENSE= GPLv2
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BROKEN_aarch64= fails to build: statement requires expression of scalar type \
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('va_list' (aka '__builtin_va_list') invalid)
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CRAN_DEPENDS= R-cran-lme4>0:math/R-cran-lme4 \
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R-cran-snow>0:science/R-cran-snow \
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R-cran-psych>0:math/R-cran-psych
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BUILD_DEPENDS= gm4:devel/m4 \
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R:math/R \
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${CRAN_DEPENDS}
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LIB_DEPENDS= libexpat.so:textproc/expat2 \
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libXm.so:x11-toolkits/open-motif \
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libf2c.so:lang/f2c \
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libfontconfig.so:x11-fonts/fontconfig \
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libfreetype.so:print/freetype2 \
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libgsl.so:math/gsl \
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libicudata.so:devel/icu \
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libnetcdff.so:science/netcdf-fortran \
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libnetpbm.so:graphics/netpbm \
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libpcre2-8.so:devel/pcre2 \
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libpng16.so:graphics/png \
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libxml2.so:textproc/libxml2
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# Remote execution of suma. Also needed for glxinfo.
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RUN_DEPENDS= endian:sysutils/endian \
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mpeg_encode:multimedia/mpeg_encode \
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qhull:math/qhull \
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R:math/R \
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${CRAN_DEPENDS}
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USES= gettext gl gmake gnome iconv jpeg:run motif readline
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USES+= perl5 python shebangfix tar:xz xorg
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USE_GITHUB= yes
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USE_GL= gl glu
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USE_GNOME= glib20
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USE_XORG= ice sm x11 xau xcb xdmcp xext xft xi xmu xrender xt
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SHEBANG_FILES= scripts_install/* \
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python_scripts/afnipy/*.py \
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python_scripts/scripts/*.py \
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jzosky/*.py \
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jzosky/lib_RetroTS/*.py \
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discoraj/ClusterExplorer/*.py \
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pkundu/*.py \
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pkundu/meica.libs/*.py \
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pkundu/meica.libs/*/*.py \
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pkundu/meica.libs/*/*/*.py
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MAKE_ENV= CC="${CC}" R_SHARE_DIR=${LOCALBASE}/lib/R/share
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MAKE_JOBS_UNSAFE=yes
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ALL_TARGET= vastness suma
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CFLAGS+= -fcommon
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###########################################################################
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# Install parameters
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SUB_FILES= pkg-message afni.cshrc afni.profile
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INSTALL_WRKSRC= ${WRKSRC}/BSD
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WRKSRC_SUBDIR= src
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OPTIONS_DEFINE= DOCS
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INSTALL_TMP= ${INSTALL_WRKSRC}-temp
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PRESTAGE= ${WRKSRC}/prestage
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.include <bsd.port.options.mk>
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CONFLICTS= im \
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nifticlib \
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open-usp-tukubai
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X11R6_FILES= coxplot/Makefile \
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coxplot/Makefile.f2c
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PKG_COMPRESSION_LEVEL= -6
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post-extract:
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.for f in ${X11R6_FILES}
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@${REINPLACE_CMD} \
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-e 's|/usr/X11R6|$${LOCALBASE}|g' ${WRKSRC}/${f}
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.endfor
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@${REINPLACE_CMD} \
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-E 's|AFNI_[0-9_]+|${PORTVERSION}|g' ${WRKSRC}/AFNI_label.h
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@${CP} ${FILESDIR}/Makefile ${WRKSRC}
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@${RM} ${WRKSRC}/3DEdge/src/Makefile.orig
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pre-configure:
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@${REINPLACE_CMD} -e "s|-lglib|-lglib-2.0|g" \
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${WRKSRC}/SUMA/SUMA_Makefile
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@${REINPLACE_CMD} \
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-e 's|os\.path\.dirname(os\.path\.abspath(os\.path\.expanduser(sys\.argv\[0\])))|"${DATADIR}"|g' \
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${WRKSRC}/pkundu/meica.py
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do-install:
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# AFNI install just dumps everything into one flat directory
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# ${WRKSRC}/BSD == ${INSTALL_WRKSRC}.
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# Preserve ${INSTALL_WRKSRC} and make a sacrificial temp copy
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# to be pruned and rearranged for easy staging
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@${RM} -r ${INSTALL_TMP}
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@${CP} -R ${INSTALL_WRKSRC} ${INSTALL_TMP}
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# Clean up and organize files into ${PRESTAGE}, destroying
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# ${INSTALL_TMP} in the process
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@${RM} -rf ${PRESTAGE}
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@${MKDIR} ${PRESTAGE}/bin \
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${PRESTAGE}/scripts \
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${PRESTAGE}/lib \
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${PRESTAGE}/include \
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${PRESTAGE}/trash \
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${PRESTAGE}/doc \
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${PRESTAGE}/share \
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${PRESTAGE}/pylib
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@${RM} ${INSTALL_TMP}/libf2c.a
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@${MV} ${INSTALL_TMP}/meica.libs \
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${INSTALL_TMP}/shiny \
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${INSTALL_TMP}/lib_RetroTS \
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${INSTALL_TMP}/funstuff \
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${INSTALL_TMP}/AFNI.*rc \
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${INSTALL_TMP}/afnigui* \
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${PRESTAGE}/share
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@${MV} ${INSTALL_TMP}/*.a \
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${INSTALL_TMP}/*.so \
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${PRESTAGE}/lib
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@${MV} ${INSTALL_TMP}/*.h ${PRESTAGE}/include
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@${MV} ${INSTALL_TMP}/afnipy ${PRESTAGE}/pylib
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@${CP} ${WRKDIR}/afni-AFNI_${PORTVERSION}/doc/README/* ${PRESTAGE}/doc
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@for binary in `${FILE} ${INSTALL_TMP}/* | fgrep 'ELF' | ${AWK} -F ':' ' { print $$1 }'` ; do \
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${MV} $${binary} ${PRESTAGE}/bin ; \
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done
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@${MV} ${INSTALL_TMP}/* ${PRESTAGE}/scripts
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# Install to STAGEDIR using proper ports tools
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@${MKDIR} \
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${STAGEDIR}${DATADIR} \
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${STAGEDIR}${PREFIX}/lib/afni \
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${STAGEDIR}${PREFIX}/include/afni \
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${STAGEDIR}${DOCSDIR} \
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${STAGEDIR}${PREFIX}/etc/mri
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${INSTALL_PROGRAM} ${PRESTAGE}/bin/* ${STAGEDIR}${PREFIX}/bin
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${INSTALL_SCRIPT} ${PRESTAGE}/scripts/* ${STAGEDIR}${PREFIX}/bin
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(cd ${PRESTAGE}/pylib && \
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${COPYTREE_SHARE} . ${STAGEDIR}${PYTHON_SITELIBDIR})
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${INSTALL_DATA} ${PRESTAGE}/lib/* ${STAGEDIR}${PREFIX}/lib/afni
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${INSTALL_DATA} ${PRESTAGE}/include/* ${STAGEDIR}${PREFIX}/include/afni
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(cd ${PRESTAGE}/share && ${COPYTREE_SHARE} . ${STAGEDIR}${DATADIR})
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${INSTALL_SCRIPT} ${WRKDIR}/afni.cshrc ${WRKDIR}/afni.profile \
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${STAGEDIR}${PREFIX}/etc/mri
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do-install-DOCS-on:
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${INSTALL_DATA} ${PRESTAGE}/doc/* ${STAGEDIR}${DOCSDIR}
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.include <bsd.port.mk>
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