freebsd-ports/biology
David Chisnall f9197640d9 Fix configure options for gnustep-make
We were not setting the flag to select the GNUstep ABI, so were defaulting to
using the GCC-compatible version, which was likely to trigger a lot of subtle
bugs.  This was noticed when C++ exceptions thrown through Objective-C stack
frames caused segfaults.
2017-12-03 12:23:53 +00:00
..
ariadne
artemis
avida
babel
bcftools
bedtools
biococoa Fix configure options for gnustep-make 2017-12-03 12:23:53 +00:00
blat
bowtie
bowtie2
bwa
cd-hit
cdbfasta
chemeq
clustalw
consed
crux
diamond
emboss
fasta
fasta3
fastdnaml
fastool
fastqc
fasttree
fastx-toolkit
fluctuate
garlic
gff2ps
gmap
gperiodic
grappa
hmmer
htslib
iolib
iqtree
jalview
jellyfish
kallisto [new port] biology/kallisto: Quantify abundances of transcripts from RNA-Seq data 2017-12-02 20:44:28 +00:00
lagan
lamarc
libgtextutils
libsbml
linux-foldingathome
mafft
mapm3
migrate
molden
mopac
mrbayes
mummer
muscle
ncbi-blast+
ncbi-toolkit
njplot
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Coordinate
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-FeatureIO
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-BioPerl
p5-BioPerl-Run
p5-transdecoder
paml
phrap
phred
phylip
phyml
plink
plinkseq
primer3
protomol
psi88
py-biom-format
py-biopython
py-bx-python
py-cutadapt
py-macs2 [new port] biology/py-macs2: Analysis of chromatin immunoprecipitation (ChIP) sequences 2017-12-02 20:46:28 +00:00
py-pysam
pycogent
pyfasta
python-nexus
recombine
ruby-bio
rubygem-bio
samtools
seaview
seqan
seqan1
seqan-apps
seqio
seqtools
sim4
slclust
ssaha
t_coffee
tinker
treepuzzle
trimmomatic
tRNAscan-SE
ugene
vcftools
velvet
wise
xmolwt
Makefile [new port] biology/py-macs2: Analysis of chromatin immunoprecipitation (ChIP) sequences 2017-12-02 20:46:28 +00:00