193567cc9e
New "reference" subcommand to extract CRAM features (1.16) Numerous minor enhancements and bug fixes Changes: https://github.com/samtools/samtools/releases
63 lines
1.5 KiB
Plaintext
63 lines
1.5 KiB
Plaintext
bin/ace2sam
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bin/blast2sam.pl
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bin/bowtie2sam.pl
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bin/export2sam.pl
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bin/fasta-sanitize.pl
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bin/interpolate_sam.pl
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bin/maq2sam-long
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bin/maq2sam-short
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bin/md5fa
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bin/md5sum-lite
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bin/novo2sam.pl
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bin/plot-ampliconstats
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bin/plot-bamstats
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bin/psl2sam.pl
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bin/sam2vcf.pl
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bin/samtools
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bin/samtools.pl
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bin/seq_cache_populate.pl
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bin/soap2sam.pl
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bin/wgsim
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bin/wgsim_eval.pl
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bin/zoom2sam.pl
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man/man1/samtools-addreplacerg.1.gz
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man/man1/samtools-ampliconclip.1.gz
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man/man1/samtools-ampliconstats.1.gz
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man/man1/samtools-bedcov.1.gz
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man/man1/samtools-calmd.1.gz
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man/man1/samtools-cat.1.gz
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man/man1/samtools-collate.1.gz
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man/man1/samtools-consensus.1.gz
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man/man1/samtools-coverage.1.gz
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man/man1/samtools-depad.1.gz
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man/man1/samtools-depth.1.gz
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man/man1/samtools-dict.1.gz
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man/man1/samtools-faidx.1.gz
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man/man1/samtools-fasta.1.gz
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man/man1/samtools-fastq.1.gz
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man/man1/samtools-fixmate.1.gz
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man/man1/samtools-flags.1.gz
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man/man1/samtools-flagstat.1.gz
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man/man1/samtools-fqidx.1.gz
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man/man1/samtools-head.1.gz
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man/man1/samtools-idxstats.1.gz
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man/man1/samtools-import.1.gz
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man/man1/samtools-index.1.gz
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man/man1/samtools-markdup.1.gz
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man/man1/samtools-merge.1.gz
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man/man1/samtools-mpileup.1.gz
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man/man1/samtools-phase.1.gz
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man/man1/samtools-quickcheck.1.gz
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man/man1/samtools-reference.1.gz
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man/man1/samtools-reheader.1.gz
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man/man1/samtools-rmdup.1.gz
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man/man1/samtools-samples.1.gz
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man/man1/samtools-sort.1.gz
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man/man1/samtools-split.1.gz
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man/man1/samtools-stats.1.gz
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man/man1/samtools-targetcut.1.gz
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man/man1/samtools-tview.1.gz
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man/man1/samtools-view.1.gz
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man/man1/samtools.1.gz
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man/man1/wgsim.1.gz
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