| .. |
|
2d-rewriter
|
|
|
|
abinit
|
|
|
|
afni
|
science/afni: update to 20.2.14
|
2020-08-22 17:32:58 +00:00 |
|
agrum
|
science/agrum: Update 0.18.0 -> 0.18.1
|
2020-07-20 19:12:02 +00:00 |
|
aircraft-datcom
|
|
|
|
ALPSCore
|
|
|
|
antioch
|
|
|
|
apbs
|
|
|
|
atompaw
|
|
|
|
avogadro2
|
|
|
|
avogadrolibs
|
|
|
|
bagel
|
|
|
|
bddsolve
|
|
|
|
berkeleygw
|
|
|
|
bodr
|
|
|
|
brian
|
|
|
|
buddy
|
|
|
|
cdcl
|
|
|
|
cdf
|
|
|
|
cdk
|
|
|
|
cdo
|
|
|
|
cgnslib
|
|
|
|
cgribex
|
|
|
|
checkmol
|
|
|
|
chemical-mime-data
|
|
|
|
chemps2
|
|
|
|
chemtool
|
|
|
|
chemtool-devel
|
|
|
|
chrono
|
|
|
|
clhep
|
|
|
|
clipper
|
|
|
|
code_saturne
|
science/code_saturne: fix build on GCC architectures
|
2020-08-17 15:33:42 +00:00 |
|
colt
|
|
|
|
coordgenlibs
|
|
|
|
cp2k
|
|
|
|
cp2k-data
|
|
|
|
crf++
|
|
|
|
dalton
|
|
|
|
datawarrior
|
Deprecate ports broken for more than 6 months
|
2020-07-26 07:32:00 +00:00 |
|
dcl
|
|
|
|
devisor
|
|
|
|
dftbplus
|
|
|
|
dkh
|
|
|
|
dlib-cpp
|
science/dlib-cpp and science/py-dlib: Update to 19.21.
|
2020-08-20 09:50:18 +00:00 |
|
dlpoly-classic
|
|
|
|
drawxtl
|
|
|
|
dvc
|
science/dvc: Remove the 2.7 python limitation because the cuplrit dependency is now python3-compatible
|
2020-08-13 20:23:18 +00:00 |
|
eccodes
|
Update to 2.18.0
|
2020-07-11 18:10:04 +00:00 |
|
elk
|
|
|
|
elmerfem
|
science/elmerfem: Update to 8.4.20200708 and fix dependencies
|
2020-07-31 09:49:03 +00:00 |
|
epte
|
|
|
|
erd
|
|
|
|
ergo
|
|
|
|
erkale
|
- Update math/armadillo to 9.900.2
|
2020-08-10 13:12:01 +00:00 |
|
erkale-pseudopotentials
|
|
|
|
fastcap
|
|
|
|
fasthenry
|
|
|
|
fastjet
|
|
|
|
fisicalab
|
|
|
|
fleur
|
Deprecate ports broken for more than 6 months
|
2020-07-26 07:32:00 +00:00 |
|
fsom
|
|
|
|
fvcom
|
|
|
|
fvcom-mpi
|
|
|
|
gabedit
|
|
|
|
gamess-us
|
|
|
|
gchemutils
|
|
|
|
gdma
|
|
|
|
getdp
|
|
|
|
ghemical
|
|
|
|
ghmm
|
|
|
|
gnudatalanguage
|
|
|
|
gpaw-setups
|
|
|
|
gramps
|
|
|
|
grib_api
|
|
|
|
gromacs
|
science/gromacs: Update 2020.2 -> 2020.3
|
2020-07-16 06:32:45 +00:00 |
|
gsmc
|
|
|
|
gtamsanalyzer
|
|
|
|
h5utils
|
|
|
|
h5z-zfp
|
|
|
|
harminv
|
|
|
|
hdf
|
science/hdf: update to 4.2.15 to fix build on powerpc64
|
2020-08-22 20:43:44 +00:00 |
|
hdf5
|
|
|
|
hdf5-18
|
|
|
|
healpix
|
|
|
|
hepmc3
|
|
|
|
highfive
|
science/highfive: Update 2.2.1 -> 2.2.2
|
2020-08-03 03:29:56 +00:00 |
|
hypre
|
|
|
|
iboview
|
|
|
|
InsightToolkit
|
|
|
|
isaac-cfd
|
|
|
|
jdftx
|
|
|
|
jmol
|
science/jmol: Update 14.31.2 -> 14.31.3
|
2020-08-20 02:31:43 +00:00 |
|
jstrack
|
|
|
|
kalzium
|
KDE's August 2020 Apps Update
|
2020-08-13 17:10:30 +00:00 |
|
kim-api
|
|
|
|
kst2
|
|
|
|
lammps
|
science/lammps: Update 21Jul2020 -> 21Aug2020
|
2020-08-21 23:15:38 +00:00 |
|
lamprop
|
|
|
|
latte
|
|
|
|
libaec
|
|
|
|
libccp4
|
|
|
|
libcint
|
|
|
|
libctl
|
|
|
|
libefp
|
|
|
|
libgeodecomp
|
Mark BROKEN
|
2020-07-12 20:12:08 +00:00 |
|
libghemical
|
|
|
|
libgridxc
|
|
|
|
libint
|
|
|
|
libint2
|
|
|
|
libkml
|
|
|
|
liblinear
|
|
|
|
libmsym
|
|
|
|
liboglappth
|
|
|
|
libquantum
|
|
|
|
libssm
|
|
|
|
libsvm
|
|
|
|
libsvm-python
|
|
|
|
libvdwxc
|
|
|
|
libxc
|
|
|
|
liggghts
|
|
|
|
lm
|
Deprecate ports broken for more than 6 months
|
2020-07-26 07:32:00 +00:00 |
|
luscus
|
|
|
|
madness
|
Update devel/tbb to 2020.3 and bump dependent ports' revisions
|
2020-07-17 10:12:25 +00:00 |
|
maeparser
|
|
|
|
massxpert
|
|
|
|
mbdyn
|
|
|
|
mcstas
|
|
|
|
mcstas-comps
|
|
|
|
mcxtrace
|
|
|
|
mcxtrace-comps
|
|
|
|
mdynamix
|
|
|
|
medit
|
|
|
|
metaphysicl
|
|
|
|
minc2
|
|
|
|
mmdb2
|
|
|
|
mmtf-cpp
|
|
|
|
mol2ps
|
|
|
|
molgif
|
|
|
|
molscript
|
|
|
|
molsketch
|
|
|
|
mpb
|
|
|
|
mpqc
|
|
|
|
msms
|
|
|
|
multiwfn
|
|
|
|
namd
|
|
|
|
nest
|
|
|
|
netcdf
|
|
|
|
netcdf-cxx
|
|
|
|
netcdf-fortran
|
science/netcdf-fortran: Unbreak build with GCC 10
|
2020-07-26 17:58:54 +00:00 |
|
nifticlib
|
|
|
|
nwchem
|
|
|
|
nwchem-data
|
|
|
|
octopus
|
|
|
|
openbabel
|
|
|
|
openkim
|
|
|
|
openkim-models
|
|
|
|
opensim-core
|
|
|
|
opensph
|
|
|
|
opsin
|
|
|
|
p5-Algorithm-SVMLight
|
|
|
|
p5-Chemistry-3DBuilder
|
|
|
|
p5-Chemistry-Bond-Find
|
|
|
|
p5-Chemistry-Canonicalize
|
|
|
|
p5-Chemistry-Elements
|
|
|
|
p5-Chemistry-File-MDLMol
|
|
|
|
p5-Chemistry-File-Mopac
|
|
|
|
p5-Chemistry-File-PDB
|
|
|
|
p5-Chemistry-File-SLN
|
|
|
|
p5-Chemistry-File-SMARTS
|
|
|
|
p5-Chemistry-File-SMILES
|
|
|
|
p5-Chemistry-File-VRML
|
|
|
|
p5-Chemistry-File-XYZ
|
|
|
|
p5-Chemistry-FormulaPattern
|
|
|
|
p5-Chemistry-InternalCoords
|
|
|
|
p5-Chemistry-Isotope
|
|
|
|
p5-Chemistry-MacroMol
|
|
|
|
p5-Chemistry-MidasPattern
|
|
|
|
p5-Chemistry-Mok
|
|
|
|
p5-Chemistry-Mol
|
|
|
|
p5-Chemistry-Pattern
|
|
|
|
p5-Chemistry-Reaction
|
|
|
|
p5-Chemistry-Ring
|
|
|
|
p5-Geo-BUFR
|
Update to 1.38
|
2020-07-24 07:10:54 +00:00 |
|
p5-Geo-Coordinates-Converter
|
|
|
|
p5-Geo-Coordinates-Converter-iArea
|
|
|
|
p5-Geo-WebService-Elevation-USGS
|
|
|
|
p5-Mcstas-Tools
|
|
|
|
p5-PerlMol
|
|
|
|
p5-Physics-Unit
|
|
|
|
packmol
|
|
|
|
pagmo2
|
Update devel/tbb to 2020.3 and bump dependent ports' revisions
|
2020-07-17 10:12:25 +00:00 |
|
paje
|
|
|
|
paraview
|
|
|
|
pcmsolver
|
|
|
|
PETSc
|
|
|
|
plumed
|
science/plumed: Update 2.6.0 -> 2.6.1
|
2020-07-16 19:51:30 +00:00 |
|
pnetcdf
|
|
|
|
pulseview
|
|
|
|
py-abipy
|
|
|
|
py-asdf
|
Update to 2.7.1
|
2020-08-21 21:24:31 +00:00 |
|
py-ase
|
science/py-ase: Update 3.19.2 -> 3.20.0
|
2020-08-10 23:52:38 +00:00 |
|
py-avogadrolibs
|
|
|
|
py-cdo
|
|
|
|
py-chainer
|
|
|
|
py-chainer-chemistry
|
science/py-chainer-chemistry: Update 0.7.0 -> 0.7.1
|
2020-08-17 20:05:58 +00:00 |
|
py-chempy
|
|
|
|
py-coards
|
|
|
|
py-DendroPy
|
|
|
|
py-dlib
|
science/py-dlib: Fix plist for non-default python flavors.
|
2020-08-22 08:57:40 +00:00 |
|
py-eccodes-python
|
|
|
|
py-geolinks
|
|
|
|
py-geomet
|
|
|
|
py-geometer
|
|
|
|
py-gpaw
|
|
|
|
py-GPy
|
|
|
|
py-GPyOpt
|
|
|
|
py-gsd
|
science/py-gsd: Update 1.10.0 -> 2.1.2
|
2020-07-22 00:31:55 +00:00 |
|
py-h5json
|
|
|
|
py-h5py
|
|
|
|
py-kim-query
|
|
|
|
py-kinematics
|
|
|
|
py-kliff
|
Unbreak bulk -a
|
2020-07-14 07:59:28 +00:00 |
|
py-liac-arff
|
|
|
|
py-lifelines
|
|
|
|
py-MDAnalysis
|
|
|
|
py-MDAnalysisTests
|
|
|
|
py-mdp
|
science/py-mdp: remove optional expired dependency on devel/py-pp
|
2020-08-15 11:19:52 +00:00 |
|
py-mmtf-python
|
|
|
|
py-molmod
|
|
|
|
py-moltemplate
|
science/py-moltemplate: Update 2.18.2 -> 2.18.3
|
2020-08-20 03:20:53 +00:00 |
|
py-netCDF4
|
|
|
|
py-obspy
|
- Update to 1.2.2
|
2020-07-18 11:50:52 +00:00 |
|
py-oddt
|
|
|
|
py-OpenFermion
|
|
|
|
py-openpiv
|
|
|
|
py-paida
|
|
|
|
py-paramz
|
|
|
|
py-phono3py
|
|
|
|
py-phonopy
|
science/py-phonopy: Update 2.5.0 -> 2.7.1
|
2020-08-05 19:17:19 +00:00 |
|
py-pupynere
|
|
|
|
py-pyaixi
|
|
|
|
py-pycsw
|
|
|
|
py-pydicom
|
|
|
|
py-PyFR
|
|
|
|
py-pygeodesy
|
|
|
|
py-pygeometa
|
|
|
|
py-pygmo2
|
|
|
|
py-pymatgen
|
|
|
|
py-pymol
|
|
|
|
py-pyosf
|
|
|
|
py-pysal
|
|
|
|
py-pyteomics
|
|
|
|
py-qcelemental
|
|
|
|
py-qcengine
|
|
|
|
py-qspin
|
|
|
|
py-quantities
|
|
|
|
py-rmf
|
|
|
|
py-rmsd
|
|
|
|
py-ruffus
|
|
|
|
py-scikit-fuzzy
|
|
|
|
py-scikit-learn
|
|
|
|
py-scikit-optimize
|
|
|
|
py-scikit-sparse
|
|
|
|
py-scimath
|
|
|
|
py-scipy
|
|
|
|
py-scoria
|
|
|
|
py-SimpleSpectral
|
|
|
|
py-spglib
|
science/py-spglib: Update 1.15.1 -> 1.16.0
|
2020-08-03 07:26:39 +00:00 |
|
py-tensorflow
|
|
|
|
py-veusz
|
|
|
|
pybrain
|
|
|
|
pynn
|
|
|
|
qbox
|
science/qbox: Update 1.71.3 -> 1.71.4
|
2020-07-16 04:11:50 +00:00 |
|
qcl
|
|
|
|
qiskit-aer
|
devel/libfmt: Update to 7.0.2
|
2020-07-31 17:07:18 +00:00 |
|
qmcpack
|
|
|
|
quantum-espresso
|
|
|
|
quantum-espresso-pseudopotentials
|
|
|
|
qwalk
|
|
|
|
R-cran-AMORE
|
|
|
|
R-cran-bayesm
|
|
|
|
R-cran-cmprsk
|
|
|
|
R-cran-DCluster
|
|
|
|
R-cran-e1071
|
|
|
|
R-cran-eco
|
|
|
|
R-cran-Epi
|
- Update to 2.41
|
2020-08-10 08:08:06 +00:00 |
|
R-cran-epicalc
|
|
|
|
R-cran-etm
|
|
|
|
R-cran-FAdist
|
|
|
|
R-cran-fastICA
|
|
|
|
R-cran-kernlab
|
|
|
|
R-cran-snow
|
|
|
|
R-cran-som
|
|
|
|
R-cran-udunits2
|
|
|
|
rdkit
|
|
|
|
rmf
|
|
|
|
rubygem-ai4r
|
|
|
|
rubygem-cdo
|
|
|
|
rubygem-rgeo
|
|
|
|
rubygem-rgeo-geojson
|
|
|
|
rubygem-rgeo-proj4
|
|
|
|
rubygem-rgeo-shapefile
|
|
|
|
rubygem-ruby-dcl
|
|
|
|
rubygem-ruby-netcdf
|
|
|
|
scidavis
|
|
|
|
siesta
|
|
|
|
sigrok-cli
|
|
|
|
sigrok-firmware
|
|
|
|
sigrok-firmware-fx2lafw
|
|
|
|
sigrok-firmware-utils
|
|
|
|
silo
|
|
|
|
simbody
|
|
|
|
simgrid
|
science/simgrid: fix build on non-aarch64, non-x86
|
2020-08-19 09:23:36 +00:00 |
|
simint
|
|
|
|
simlib
|
|
|
|
simsmith
|
|
|
|
smoldyn
|
|
|
|
sparta
|
science/sparta: Update 24Jan2020 -> 6Jul2020
|
2020-07-13 23:41:01 +00:00 |
|
spglib
|
science/spglib: Update 1.15.1 -> 1.16.0
|
2020-08-03 07:26:08 +00:00 |
|
step
|
KDE's August 2020 Apps Update
|
2020-08-13 17:10:30 +00:00 |
|
svmlight
|
|
|
|
szip
|
|
|
|
teem
|
|
|
|
tfel
|
|
|
|
tinker
|
science/tinker: Update 8.7.2 -> 8.8.1
|
2020-08-17 20:37:46 +00:00 |
|
udunits
|
|
|
|
v_sim
|
- Fix build without NLS (missing gettext-tools dependency) and without EXAMPLES (broken patching)
|
2020-08-04 16:00:43 +00:00 |
|
vipster
|
devel/libfmt: Update to 7.0.2
|
2020-07-31 17:07:18 +00:00 |
|
vmd
|
|
|
|
voro++
|
|
|
|
votca
|
|
|
|
wannier90
|
|
|
|
wwplot
|
|
|
|
wxmacmolplt
|
|
|
|
xcrysden
|
|
|
|
xdrawchem
|
|
|
|
xfce4-equake-plugin
|
|
|
|
xtb
|
|
|
|
yoda
|
|
|
|
Makefile
|
Remove deprecated ports:
|
2020-08-15 10:50:58 +00:00 |
