a156fdcf52
The Subread package comprises a suite of software programs for processing
next-gen sequencing read data including:
Subread: a general-purpose read aligner
Subjunc: a read aligner developed for aligning RNA-seq reads
featureCounts: a software program developed for counting reads to genomic
features such as genes, exons, promoters and genomic bins.
Sublong: a long-read aligner that is designed based on seed-and-vote.
exactSNP: discovers SNPs by testing signals against local background noise.
24 lines
512 B
Makefile
24 lines
512 B
Makefile
# $FreeBSD$
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PORTNAME= subread
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DISTVERSION= 2.0.1
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DISTVERSIONSUFFIX= -source
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CATEGORIES= biology
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MASTER_SITES= SF/${PORTNAME}/${PORTNAME}-${PORTVERSION}
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MAINTAINER= jwb@FreeBSD.org
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COMMENT= High-performance read alignment, quantification and mutation discovery
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LICENSE= GPLv3
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LICENSE_FILE= ${WRKDIR}/${DISTNAME}/LICENSE
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LIB_DEPENDS= libsysinfo.so:devel/libsysinfo
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USES= gmake localbase:ldflags
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MAKEFILE= ${FILESDIR}/Makefile.pkg
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WRKSRC_SUBDIR= src
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INSTALL_TARGET= install-strip
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.include <bsd.port.mk>
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