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freebsd-ports/biology
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Mark Linimon ba601f25ac Mark some ports failing on power64. In cases where the error message 
was a stub, provide a real one.

While here, pet portlint.

Approved by:	portmgr (tier-2 blanket)
2017-05-13 03:35:51 +00:00
..
ariadne
artemis - Fix shebangs 2017-04-21 16:28:25 +00:00
avida Mark some ports failing on power64. In cases where the error message 2017-05-13 03:35:51 +00:00
babel
bcftools Update math/gsl to 2.3 2017-05-02 05:26:40 +00:00
bedtools
biococoa
biojava
blat biology/blat: Fix build on DF (taken from dports) 2016-12-18 04:46:53 +00:00
bowtie - Fix shebangs 2017-04-22 09:25:44 +00:00
bowtie2 Update devel/tbb to 2017.5 2017-03-07 12:44:41 +00:00
bwa Mark some ports failing on power64. In cases where the error message 2017-05-13 03:35:51 +00:00
cd-hit Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
cdbfasta Update WWW: SF redirects to https://sourceforge.net/projects/<PROJECT_NAME>/ 2017-01-20 20:33:30 +00:00
chemeq biology/chemeq: fix build on GCC (taken from dports) 2016-12-18 04:22:26 +00:00
clustalw
consed
crux Provide error messages for some ports failing on aarch64, and, in a 2017-05-01 19:24:00 +00:00
diamond biology/diamond: Update to version 0.8.38 2017-04-21 14:46:07 +00:00
emboss
fasta
fasta3
fastdnaml
fastool Never set WRKSRC when using USE_GITHUB. 2017-01-03 18:12:13 +00:00
fasttree Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
fastx-toolkit
fluctuate
garlic
gff2ps
gmap Mark some ports failing on power64. In cases where the error message 2017-05-13 03:35:51 +00:00
gperiodic Remove libintl.so.9 compatibility link that was added in r374303 to 2016-12-08 19:52:19 +00:00
grappa
hmmer
htslib
iolib Mark some ports failing on power64. In cases where the error message 2017-05-13 03:35:51 +00:00
jalview
jellyfish Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
lagan
lamarc biology/lamarc: Fix build on DF (taken from dports) 2016-12-18 04:34:33 +00:00
libgtextutils
libsbml
linux-foldingathome
mafft
mapm3
migrate
molden Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
mopac Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
mrbayes
mummer
muscle
ncbi-blast+ Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
ncbi-toolkit Remove libjpeg.so.11 compatibility link that was added in r374303 to 2016-12-08 16:39:11 +00:00
njplot biology/njplot: Add site in MASTER_SITES because package builders are 2016-11-28 15:19:42 +00:00
p5-AcePerl Move -fPIC to where Linux puts it so it is limited to a single library. 2017-02-13 22:43:58 +00:00
p5-Bio-ASN1-EntrezGene - Add LICENSE 2016-12-18 15:25:13 +00:00
p5-Bio-Coordinate - Add p5-Bio-Coordinate 1.007001 2016-12-19 15:54:39 +00:00
p5-Bio-Das - Add LICENSE 2016-12-18 15:25:18 +00:00
p5-Bio-Das-Lite
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics Bump PORTREVISION for ports affected by the fix the last commit. 2017-01-31 16:21:45 +00:00
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo - Add LICENSE_FILE 2016-12-18 15:25:22 +00:00
p5-Bio-SCF
p5-BioPerl - Fix shebangs 2017-04-22 12:45:43 +00:00
p5-BioPerl-Run Bump PORTREVISION for ports affected by the fix the last commit. 2017-01-31 16:21:45 +00:00
p5-transdecoder Never set WRKSRC when using USE_GITHUB. 2017-01-03 18:12:13 +00:00
paml
phrap
phred
phylip
phyml
plink Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
plinkseq Mark some ports failing on power64. In cases where the error message 2017-05-13 03:35:51 +00:00
primer3
protomol biology/protomol: Support build with C++11 (taken from dports) 2016-12-18 05:34:42 +00:00
psi88 Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
py-biom-format biology/py-biom-format: Update to version 2.1.6 2017-04-29 13:59:15 +00:00
py-biopython - Update to 1.69 2017-05-03 12:39:28 +00:00
py-bx-python bx-python is a python library and associated set of scripts to allow for rapid 2017-05-06 06:07:03 +00:00
py-pysam - Update to 0.11.1 2017-05-07 16:06:23 +00:00
pycogent
pyfasta
python-nexus - Update to 1.42 2017-03-01 07:00:37 +00:00
recombine
ruby-bio - Update to 1.5.1 2017-05-07 15:44:34 +00:00
rubygem-bio Update to 1.5.1 2017-02-06 23:03:17 +00:00
samtools
seaview biology/seaview: Update version 4.6=>4.6.1 2017-04-11 18:58:18 +00:00
seqan
seqan1
seqan-apps devel/boost-*: update to 1.64.0 2017-05-02 06:48:10 +00:00
seqio
seqtools Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
sim4
slclust Update WWW: SF redirects to https://sourceforge.net/projects/<PROJECT_NAME>/ 2017-01-20 20:33:30 +00:00
ssaha Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
t_coffee Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
tinker Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
treepuzzle
trimmomatic
tRNAscan-SE
ugene - Remove always-true/false conditions after FreeBSD 9, 10.1, 10.2 EOL 2017-01-09 13:16:49 +00:00
vcftools Assume "pkg-config zlib" works after 9.x reached EOL 2017-01-03 17:06:49 +00:00
velvet
wise Remove libintl.so.9 compatibility link that was added in r374303 to 2016-12-08 19:52:19 +00:00
xmolwt Remove libintl.so.9 compatibility link that was added in r374303 to 2016-12-08 19:52:19 +00:00
Makefile bx-python is a python library and associated set of scripts to allow for rapid 2017-05-06 06:07:03 +00:00