freebsd-ports/biology
John Marino 1e92f54830 biology/mapm3: document ncurses rqmt (USES+=ncurses), respect LDFLAGS
Also link with libncurses, not libtermcap

approved by:	infrastructure blanket
2016-02-01 22:09:10 +00:00
..
ariadne
artemis
avida mark some of the ports that don't build on powerpc64 for me 2015-12-13 16:07:27 +00:00
babel
bcftools biology/{bcftools,htslib,samtools}: update 1.2.x -> 1.3 2015-12-25 01:31:09 +00:00
bedtools The bedtools utilities are a suite of tools for performing a wide range of 2016-01-19 08:56:34 +00:00
biococoa
biojava
blat
bwa mark some of the ports that don't build on powerpc64 for me 2015-12-13 16:07:27 +00:00
cd-hit - Update maintainer mail address 2015-12-11 08:48:56 +00:00
cdbfasta - Update maintainer mail address 2015-12-11 08:48:56 +00:00
chemeq
clustalw
consed biology/consed: undeprecate, it presumably builds fine but it is restricted. 2015-12-26 13:26:27 +00:00
crux biology/crux is not jobs safe 2015-12-30 19:49:17 +00:00
emboss
fasta
fasta3
fastdnaml Convert LICENSE= "GPLxx # or later" to "GPLxx+" 2016-01-12 16:20:31 +00:00
fastool - Update maintainer mail address 2015-12-11 08:48:56 +00:00
fasttree - Update maintainer mail address 2015-12-11 08:48:56 +00:00
fastx-toolkit Cleanup GH_* and variables order. 2015-12-29 14:30:46 +00:00
fluctuate
garlic
gff2ps Convert LICENSE= "GPLxx # or later" to "GPLxx+" 2016-01-12 16:20:31 +00:00
gmap mark some of the ports that don't build on powerpc64 for me 2015-12-13 16:07:27 +00:00
gperiodic
grappa
hmmer - Update maintainer mail address 2015-12-11 08:48:56 +00:00
htslib biology/htslib: Replace FreeBSD-specific fix with a generic one 2015-12-29 15:05:44 +00:00
iolib
jalview
lagan Remove deprecated PLIST_DIRSTRY and also no longer needed PLIST_DIRS 2016-01-09 18:26:40 +00:00
lamarc Cleanup GH_* and variables order. 2015-12-29 14:30:46 +00:00
libgtextutils Cleanup GH_* and variables order. 2015-12-29 14:30:46 +00:00
libsbml
linux-foldingathome
mafft - Update to 7.266 2015-12-25 07:19:00 +00:00
mapm3 biology/mapm3: document ncurses rqmt (USES+=ncurses), respect LDFLAGS 2016-02-01 22:09:10 +00:00
migrate
molden biology/molden: updated distfile, take maintainer 2016-01-20 19:31:52 +00:00
mopac Convert LICENSE= "GPLxx # or later" to "GPLxx+" 2016-01-12 16:20:31 +00:00
mrbayes
mummer
muscle mark some of the ports that don't build on powerpc64 for me 2015-12-13 16:07:27 +00:00
ncbi-blast+ Add Public Domain support to ports license framework. You can now use 2016-01-12 14:33:21 +00:00
ncbi-toolkit
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-bioperl
p5-bioperl-run
paml
phrap
phred
phylip
phyml
platon
plink - Update maintainer mail address 2015-12-11 08:48:56 +00:00
plinkseq - Update maintainer mail address 2015-12-11 08:48:56 +00:00
primer3
protomol
psi88
py-biopython
pycogent
pyfasta
python-nexus
recombine
ruby-bio mark ports that don't work with Ruby 2.3 2016-01-17 07:06:25 +00:00
samtools biology/samtools: document ncurses requirement (USES+=ncurses) 2016-02-01 21:59:14 +00:00
seaview
seqan
seqio
seqtools
sim4
ssaha
t_coffee
tinker
treepuzzle
treeviewx Convert LICENSE= "GPLxx # or later" to "GPLxx+" 2016-01-12 16:20:31 +00:00
tRNAscan-SE
ugene
velvet
wise
xmolwt
Makefile The bedtools utilities are a suite of tools for performing a wide range of 2016-01-19 08:56:34 +00:00