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artemis
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avida
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Change cmake default behaviour to outsource.
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2018-12-25 20:25:39 +00:00 |
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babel
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bamtools
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Change cmake default behaviour to outsource.
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2018-12-25 20:25:39 +00:00 |
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bcftools
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biology/bcftools: update to 1.9
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2018-08-02 19:30:57 +00:00 |
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bedtools
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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biococoa
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Update Objective-C LLVM version to 6.0.
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2018-09-26 15:23:37 +00:00 |
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bowtie
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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bowtie2
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Update devel/tbb to version 2019.1 and bump dependent ports' revisions
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2018-10-11 14:47:13 +00:00 |
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bwa
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canu
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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cd-hit
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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cdbfasta
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checkm
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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chemeq
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clustal-omega
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clustalw
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clustalx
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Mark QT4 ports/functionality for removal on 2019-03-15
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2018-12-02 15:41:47 +00:00 |
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consed
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cytoscape
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biology/cytoscape: Fix license
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2018-08-12 06:29:51 +00:00 |
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ddocent
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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diamond
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biology/diamond: Update to version 0.9.24
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2018-12-31 19:00:00 +00:00 |
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emboss
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exonerate
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New port: biology/exonerate: Generic tool for sequence alignment
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2018-07-13 07:02:16 +00:00 |
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fasta
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fasta3
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fastahack
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fastdnaml
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fastool
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fastqc
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fasttree
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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fastx-toolkit
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fluctuate
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freebayes
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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garlic
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gatk
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devel/gradle: Update to 5.0
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2018-12-04 17:53:46 +00:00 |
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gff2ps
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biology/gff2ps: update 0.98d to 0.98l
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2018-12-19 17:34:29 +00:00 |
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gmap
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gperiodic
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grappa
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groopm
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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hmmer
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biology/hmmer: update to 3.2.1
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2018-07-11 15:15:03 +00:00 |
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htslib
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biology/htslib: update to 1.9
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2018-08-02 19:27:13 +00:00 |
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hyphy
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Change cmake default behaviour to outsource.
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2018-12-25 20:25:39 +00:00 |
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igv
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devel/gradle: Update to 5.0
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2018-12-04 17:53:46 +00:00 |
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infernal
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Allow building on powerpc64.
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2018-09-27 23:02:56 +00:00 |
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iolib
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Remove the incorrect typedefs to fix build on tier-2.
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2018-11-05 19:45:23 +00:00 |
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iqtree
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biology/iqtree: switch to outsource cmake build
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2018-12-27 18:34:44 +00:00 |
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jalview
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jellyfish
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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kallisto
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Update science/hdf5 to 1.10.4
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2019-01-05 22:46:53 +00:00 |
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lagan
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lamarc
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biology/lamarc: Fix build with Clang 6
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2018-08-25 03:13:37 +00:00 |
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libgtextutils
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libsbml
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Change cmake default behaviour to outsource.
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2018-12-25 20:25:39 +00:00 |
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linux-foldingathome
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biology/linux-foldingathome: reset maintainer by request
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2018-07-27 02:19:43 +00:00 |
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mafft
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mapm3
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migrate
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molden
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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mopac
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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mrbayes
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mummer
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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muscle
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ncbi-blast+
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Update dns/libidn2 to 2.1.0
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2019-01-06 20:39:43 +00:00 |
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ncbi-cxx-toolkit
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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ncbi-toolkit
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Update dns/libidn2 to 2.1.0
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2019-01-06 20:39:43 +00:00 |
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ngs-sdk
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biology/ngs-sdk: Update 2.9.2 -> 2.9.3
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2018-10-18 21:38:21 +00:00 |
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p5-AcePerl
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Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
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2018-10-06 13:06:42 +00:00 |
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p5-Bio-ASN1-EntrezGene
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Update to 1.73
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2018-10-10 10:23:10 +00:00 |
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p5-Bio-Coordinate
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Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
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2018-10-06 13:06:42 +00:00 |
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p5-Bio-Das
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Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
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2018-10-06 13:06:42 +00:00 |
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p5-Bio-Das-Lite
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Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
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2018-10-06 13:06:42 +00:00 |
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p5-Bio-FeatureIO
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Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
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2018-10-06 13:06:42 +00:00 |
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p5-Bio-GFF3
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Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
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2018-10-06 13:06:42 +00:00 |
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p5-Bio-Glite
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Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
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2018-10-06 13:06:42 +00:00 |
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p5-Bio-Graphics
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Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
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2018-10-06 13:06:42 +00:00 |
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p5-Bio-MAGETAB
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Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
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2018-10-06 13:06:42 +00:00 |
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p5-Bio-NEXUS
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Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
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2018-10-06 13:06:42 +00:00 |
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p5-Bio-Phylo
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Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
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2018-10-06 13:06:42 +00:00 |
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p5-Bio-SCF
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Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
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2018-10-06 13:06:42 +00:00 |
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p5-BioPerl
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Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
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2018-10-06 13:06:42 +00:00 |
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p5-BioPerl-Run
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Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
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2018-10-06 13:06:42 +00:00 |
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p5-transdecoder
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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p5-TrimGalore
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paml
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pbbam
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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pbcopper
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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pbseqan
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pear-merger
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phrap
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Add DOCS options to ports that should have one.
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2018-09-10 13:14:50 +00:00 |
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phred
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Add DOCS options to ports that should have one.
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2018-09-10 13:14:50 +00:00 |
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phylip
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phyml
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Change 4 ports from net/mpich2 to net/mpich
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2018-09-22 18:00:24 +00:00 |
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plinkseq
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primer3
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biology/primer3: Fix build with Clang 6
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2018-08-25 03:35:46 +00:00 |
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protomol
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biology/protomol: Fix doubled USES overwriting the old value
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2018-08-25 03:47:25 +00:00 |
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psi88
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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py-biom-format
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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py-biopython
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- Update to 1.73
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2018-12-22 04:54:51 +00:00 |
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py-bx-python
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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py-cutadapt
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biology/py-cutadapt: Upgrade to 1.18
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2018-09-20 14:10:52 +00:00 |
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py-fastTSNE
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New port: biology/py-fastTSNE: Fast, parallel implementations of t-SNE
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2018-12-15 08:58:05 +00:00 |
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py-Genesis-PyAPI
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py-gffutils
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New port: biology/py-gffutils: Work with GFF and GTF files in a flexible database framework
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2018-10-19 02:06:53 +00:00 |
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py-gtfparse
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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py-loompy
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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py-macs2
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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py-orange3-bioinformatics
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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py-orange3-single-cell
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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py-pyfaidx
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biology/py-pyfaidx: Update 0.5.5.1 -> 0.5.5.2
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2018-10-28 04:34:14 +00:00 |
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py-pysam
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biology/py-pysam: Update 0.15.0 -> 0.15.1
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2018-09-17 17:40:28 +00:00 |
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pycogent
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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pyfasta
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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python-nexus
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- Update to 1.63
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2018-09-22 08:54:58 +00:00 |
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rainbow
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recombine
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ruby-bio
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rubygem-bio
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Update to 1.5.2
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2018-09-21 18:08:24 +00:00 |
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samtools
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biology/samtools: update to 1.9
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2018-08-02 19:28:36 +00:00 |
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seaview
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biology/seaview: Fix build with Clang 6
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2018-09-08 09:01:35 +00:00 |
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seqan
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seqan1
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seqan-apps
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Change cmake default behaviour to outsource.
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2018-12-25 20:25:39 +00:00 |
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seqio
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seqtk
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seqtools
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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sim4
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slclust
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smithwaterman
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stacks
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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stringtie
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New port: biology/stringtie: Transcript assembly and quantification for RNA-seq
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2018-07-11 21:32:39 +00:00 |
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t_coffee
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Bump PORTREVISION for ports depending on the canonical version of GCC
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2018-12-12 01:35:33 +00:00 |
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tabixpp
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treepuzzle
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trimadap
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trimmomatic
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tRNAscan-SE
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- Unbreak by adding missing pkg-plist
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2018-09-28 00:12:48 +00:00 |
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ugene
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Update Qt5 to 5.12.0
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2018-12-16 14:49:16 +00:00 |
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unanimity
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Change cmake default behaviour to outsource.
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2018-12-25 20:25:39 +00:00 |
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vcflib
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Mark these ports as broken on aarch64.
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2018-06-22 00:03:08 +00:00 |
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vcftools
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biology/vcftools: Update to 0.1.16, a security release
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2018-08-04 01:29:29 +00:00 |
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velvet
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wise
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Makefile
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Remove expired ports:
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2018-12-21 13:19:02 +00:00 |
06e735460e