John Marino 6f9efe7d5a biology/ncbi-blast+: Remove redundant LIB_DEPENDS (bz2 libary) ... All support platforms have libbz2.so in base, so this port will never pull in archivers/bzip2. Approved by: just-fix-it		2016-09-11 05:35:42 +00:00
..
ariadne	Cleanup $() variables in ports Makefiles.	2016-07-20 15:33:20 +00:00
artemis
avida
babel
bcftools
bedtools	biology/bedtools is not jobs safe	2016-08-22 04:32:18 +00:00
biococoa
biojava	When there is a do-install target, do not use a post-install target, do	2016-07-19 11:04:13 +00:00
blat
bowtie
bowtie2
bwa
cd-hit
cdbfasta
chemeq
clustalw
consed	- Replace Mk/bsd.linux-apps.mk and Mk/bsd.linux-rpm.mk with	2016-09-05 19:23:42 +00:00
crux
diamond	- Update to 0.8.20	2016-09-06 06:34:59 +00:00
emboss	- update libgd to 2.2.2	2016-07-20 09:33:31 +00:00
fasta
fasta3
fastdnaml
fastool
fasttree
fastx-toolkit
fluctuate
garlic
gff2ps
gmap
gperiodic	- LICENSE	2016-07-02 09:05:22 +00:00
grappa
hmmer
htslib
iolib
jalview
jellyfish
lagan
lamarc	- Switch to options helpers	2016-08-18 09:31:58 +00:00
libgtextutils
libsbml
linux-foldingathome	- Replace Mk/bsd.linux-apps.mk and Mk/bsd.linux-rpm.mk with	2016-09-05 19:23:42 +00:00
mafft
mapm3
migrate
molden	biology/molden: 5.4 -> 5.7	2016-08-26 06:00:47 +00:00
mopac
mrbayes
mummer
muscle
ncbi-blast+	biology/ncbi-blast+: Remove redundant LIB_DEPENDS (bz2 libary)	2016-09-11 05:35:42 +00:00
ncbi-toolkit	- Add missing dependency, fixing build	2016-06-24 09:04:45 +00:00
p5-AcePerl
p5-Bio-ASN1-EntrezGene	- Update to 1.72	2016-09-11 05:26:01 +00:00
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-bioperl
p5-bioperl-run
p5-transdecoder
paml
phrap
phred
phylip
phyml
plink
plinkseq
primer3
protomol
psi88
py-biom-format	- Fix run-time dependency issues	2016-06-11 09:25:04 +00:00
py-biopython
pycogent	- Update to 1.9 [1]	2016-08-08 11:21:04 +00:00
pyfasta
python-nexus
recombine	When there is a do-install target, do not use a post-install target, do	2016-07-19 11:04:13 +00:00
ruby-bio
samtools
seaview	biology/seaview: Update version 4.5.4.8=>4.6	2016-06-10 11:06:42 +00:00
seqan
seqan1	When there is a do-install target, do not use a post-install target, do	2016-07-19 11:04:13 +00:00
seqan-apps
seqio
seqtools	biology/seqtools: 4.42.1 -> 4.43.0	2016-07-31 14:19:09 +00:00
sim4
slclust
ssaha
t_coffee
tinker
treepuzzle
treeviewx
trimmomatic
tRNAscan-SE
ugene
vcftools
velvet
wise	- Switch to options helpers	2016-06-21 09:05:06 +00:00
xmolwt
Makefile	Remove expired ports without open PRs:	2016-07-04 20:48:23 +00:00