535 lines
19 KiB
Plaintext
535 lines
19 KiB
Plaintext
bin/mirtk
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include/mirtk/AdaptiveLineSearch.h
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include/mirtk/AffineTransformation.h
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include/mirtk/Algorithm.h
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include/mirtk/Allocate.h
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include/mirtk/Arith.h
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include/mirtk/Arpack.h
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include/mirtk/Array.h
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include/mirtk/ArrayHeap.h
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include/mirtk/Assert.h
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include/mirtk/BSpline.h
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include/mirtk/BSplineFreeFormTransformation3D.h
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include/mirtk/BSplineFreeFormTransformation4D.h
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include/mirtk/BSplineFreeFormTransformationSV.h
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include/mirtk/BSplineFreeFormTransformationStatistical.h
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include/mirtk/BSplineFreeFormTransformationTD.h
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include/mirtk/BSplineInterpolateImageFunction.h
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include/mirtk/BSplineInterpolateImageFunction.hxx
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include/mirtk/BSplineInterpolateImageFunction2D.h
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include/mirtk/BSplineInterpolateImageFunction2D.hxx
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include/mirtk/BSplineInterpolateImageFunction3D.h
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include/mirtk/BSplineInterpolateImageFunction3D.hxx
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include/mirtk/BSplineInterpolateImageFunction4D.h
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include/mirtk/BSplineInterpolateImageFunction4D.hxx
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include/mirtk/BaseImage.h
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include/mirtk/BinaryVoxelFunction.h
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include/mirtk/BrentLineSearch.h
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include/mirtk/CSplineInterpolateImageFunction.h
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include/mirtk/CSplineInterpolateImageFunction.hxx
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include/mirtk/CSplineInterpolateImageFunction2D.h
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include/mirtk/CSplineInterpolateImageFunction2D.hxx
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include/mirtk/CSplineInterpolateImageFunction3D.h
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include/mirtk/CSplineInterpolateImageFunction3D.hxx
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include/mirtk/CSplineInterpolateImageFunction4D.h
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include/mirtk/CSplineInterpolateImageFunction4D.hxx
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include/mirtk/Cfstream.h
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include/mirtk/CharbonnierErrorFunction.h
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include/mirtk/Cifstream.h
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include/mirtk/CityBlockDistanceTransform.h
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include/mirtk/Closing.h
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include/mirtk/Cofstream.h
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include/mirtk/Common.h
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include/mirtk/CommonConfig.h
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include/mirtk/CommonExport.h
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include/mirtk/Config.h
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include/mirtk/Configurable.h
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include/mirtk/ConjugateGradientDescent.h
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include/mirtk/ConnectedComponents.h
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include/mirtk/ConstExtrapolateImageFunction.h
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include/mirtk/ConstExtrapolateImageFunctionWithPeriodicTime.h
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include/mirtk/ConstGenericImageIterator.h
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include/mirtk/ConstImageIterator.h
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include/mirtk/ConstraintMeasure.h
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include/mirtk/ConvolutionFunction.h
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include/mirtk/CosineOfNormalizedGradientField.h
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include/mirtk/CubicBSplineConvolution.h
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include/mirtk/CubicBSplineInterpolateImageFunction.h
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include/mirtk/CubicBSplineInterpolateImageFunction.hxx
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include/mirtk/CubicBSplineInterpolateImageFunction2D.h
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include/mirtk/CubicBSplineInterpolateImageFunction2D.hxx
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include/mirtk/CubicBSplineInterpolateImageFunction3D.h
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include/mirtk/CubicBSplineInterpolateImageFunction3D.hxx
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include/mirtk/CubicBSplineInterpolateImageFunction4D.h
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include/mirtk/CubicBSplineInterpolateImageFunction4D.hxx
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include/mirtk/Cuda.h
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include/mirtk/CudaRuntime.h
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include/mirtk/CurrentsDistance.h
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include/mirtk/CutilMath.h
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include/mirtk/DataFidelity.h
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include/mirtk/DataFunctions.h
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include/mirtk/DataOp.h
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include/mirtk/DataSelection.h
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include/mirtk/DataStatistics.h
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include/mirtk/Deallocate.h
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include/mirtk/DifferenceOfCompositionLieBracketImageFilter3D.h
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include/mirtk/Dilation.h
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include/mirtk/DisplacementFieldExp.h
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include/mirtk/DisplacementToVelocityField.h
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include/mirtk/DisplacementToVelocityFieldBCH.h
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include/mirtk/DistanceErrorFunction.h
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include/mirtk/Downsampling.h
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include/mirtk/Eigen.h
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include/mirtk/EnergyMeasure.h
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include/mirtk/EnergyTerm.h
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include/mirtk/EnergyThreshold.h
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include/mirtk/Erosion.h
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include/mirtk/EuclideanDistanceTransform.h
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include/mirtk/Event.h
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include/mirtk/EventDelegate.h
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include/mirtk/Exception.h
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include/mirtk/ExtrapolateImageFunction.h
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include/mirtk/ExtrapolationMode.h
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include/mirtk/FFDIntegrationMethod.h
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include/mirtk/FastCubicBSplineInterpolateImageFunction.h
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include/mirtk/FastCubicBSplineInterpolateImageFunction.hxx
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include/mirtk/FastCubicBSplineInterpolateImageFunction2D.h
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include/mirtk/FastCubicBSplineInterpolateImageFunction2D.hxx
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include/mirtk/FastCubicBSplineInterpolateImageFunction3D.h
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include/mirtk/FastCubicBSplineInterpolateImageFunction3D.hxx
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include/mirtk/FastCubicBSplineInterpolateImageFunction4D.h
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include/mirtk/FastCubicBSplineInterpolateImageFunction4D.hxx
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include/mirtk/FastDelegate.h
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include/mirtk/FastLinearImageGradientFunction.h
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include/mirtk/FastLinearImageGradientFunction.hxx
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include/mirtk/FastLinearImageGradientFunction2D.h
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include/mirtk/FastLinearImageGradientFunction2D.hxx
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include/mirtk/FastLinearImageGradientFunction3D.h
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include/mirtk/FastLinearImageGradientFunction3D.hxx
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include/mirtk/FiducialRegistrationError.h
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include/mirtk/FluidFreeFormTransformation.h
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include/mirtk/ForEachBinaryVoxelFunction.h
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include/mirtk/ForEachNonaryVoxelFunction.h
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include/mirtk/ForEachOctaryVoxelFunction.h
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include/mirtk/ForEachQuaternaryVoxelFunction.h
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include/mirtk/ForEachQuinaryVoxelFunction.h
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include/mirtk/ForEachSenaryVoxelFunction.h
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include/mirtk/ForEachSeptenaryVoxelFunction.h
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include/mirtk/ForEachTernaryVoxelFunction.h
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include/mirtk/ForEachUnaryVoxelFunction.h
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include/mirtk/FreeFormTransformation.h
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include/mirtk/FreeFormTransformation3D.h
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include/mirtk/FreeFormTransformation4D.h
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include/mirtk/GIPLImageReader.h
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include/mirtk/GIPLImageWriter.h
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include/mirtk/GaussianBlurring.h
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include/mirtk/GaussianBlurring2D.h
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include/mirtk/GaussianBlurring4D.h
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include/mirtk/GaussianBlurringWithPadding.h
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include/mirtk/GaussianBlurringWithPadding2D.h
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include/mirtk/GaussianErrorFunction.h
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include/mirtk/GaussianInterpolateImageFunction.h
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include/mirtk/GaussianInterpolateImageFunction.hxx
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include/mirtk/GaussianInterpolateImageFunction2D.h
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include/mirtk/GaussianInterpolateImageFunction2D.hxx
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include/mirtk/GaussianInterpolateImageFunction3D.h
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include/mirtk/GaussianInterpolateImageFunction3D.hxx
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include/mirtk/GaussianInterpolateImageFunction4D.h
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include/mirtk/GaussianInterpolateImageFunction4D.hxx
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include/mirtk/GaussianPyramidFilter.h
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include/mirtk/GenericImage.h
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include/mirtk/GenericImageIterator.h
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include/mirtk/GenericRegistrationDebugger.h
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include/mirtk/GenericRegistrationFilter.h
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include/mirtk/GenericRegistrationLogger.h
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include/mirtk/GradientDescent.h
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include/mirtk/GradientFieldSimilarity.h
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include/mirtk/GradientImageFilter.h
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include/mirtk/HashImage.h
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include/mirtk/HashImage.hxx
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include/mirtk/HessianImageFilter.h
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include/mirtk/Histogram1D.h
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include/mirtk/Histogram2D.h
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include/mirtk/HistogramImageSimilarity.h
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include/mirtk/HistogramMatching.h
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include/mirtk/HomogeneousTransformation.h
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include/mirtk/HomogeneousTransformationIterator.h
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include/mirtk/IOConfig.h
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include/mirtk/IOExport.h
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include/mirtk/Image.h
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include/mirtk/ImageAttributes.h
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include/mirtk/ImageConfig.h
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include/mirtk/ImageCovariance.h
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include/mirtk/ImageExport.h
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include/mirtk/ImageFunction.h
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include/mirtk/ImageGradientFunction.h
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include/mirtk/ImageGradientFunction.hxx
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include/mirtk/ImageIterator.h
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include/mirtk/ImageReader.h
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include/mirtk/ImageReaderFactory.h
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include/mirtk/ImageRegion.h
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include/mirtk/ImageSequence.h
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include/mirtk/ImageSequence.hh
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include/mirtk/ImageSimilarity.h
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include/mirtk/ImageToImage.h
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include/mirtk/ImageToInterpolationCoefficients.h
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include/mirtk/ImageTransformation.h
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include/mirtk/ImageWriter.h
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include/mirtk/ImageWriterFactory.h
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include/mirtk/Indent.h
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include/mirtk/InexactLineSearch.h
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include/mirtk/IntensityCorrelationRatioXY.h
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include/mirtk/IntensityCorrelationRatioYX.h
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include/mirtk/IntensityCrossCorrelation.h
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include/mirtk/InterpolateImageFunction.h
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include/mirtk/InterpolateImageFunction.hxx
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include/mirtk/InterpolationMode.h
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include/mirtk/InverseAffineTransformation.h
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include/mirtk/JacobianConstraint.h
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include/mirtk/JointImageEntropy.h
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include/mirtk/LabelConsistency.h
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include/mirtk/LieBracketImageFilter.h
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include/mirtk/LieBracketImageFilter2D.h
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include/mirtk/LieBracketImageFilter3D.h
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include/mirtk/LimitedMemoryBFGSDescent.h
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include/mirtk/LineSearch.h
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include/mirtk/LinearElasticityConstraint.h
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include/mirtk/LinearFreeFormTransformation3D.h
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include/mirtk/LinearFreeFormTransformation4D.h
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include/mirtk/LinearFreeFormTransformationTD.h
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include/mirtk/LinearImageGradientFunction.h
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include/mirtk/LinearImageGradientFunction.hxx
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include/mirtk/LinearImageGradientFunction2D.h
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include/mirtk/LinearImageGradientFunction2D.hxx
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include/mirtk/LinearImageGradientFunction3D.h
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include/mirtk/LinearImageGradientFunction3D.hxx
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include/mirtk/LinearInterpolateImageFunction.h
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include/mirtk/LinearInterpolateImageFunction.hxx
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include/mirtk/LinearInterpolateImageFunction2D.h
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include/mirtk/LinearInterpolateImageFunction2D.hxx
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include/mirtk/LinearInterpolateImageFunction3D.h
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include/mirtk/LinearInterpolateImageFunction3D.hxx
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include/mirtk/LinearInterpolateImageFunction4D.h
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include/mirtk/LinearInterpolateImageFunction4D.hxx
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include/mirtk/List.h
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include/mirtk/LocalOptimizer.h
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include/mirtk/LogJacobianConstraint.h
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include/mirtk/Math.h
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include/mirtk/Matlab.h
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include/mirtk/Matrix.h
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include/mirtk/Matrix3x3.h
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include/mirtk/MaxStepLineSearch.h
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include/mirtk/MeanSquaredDisplacementError.h
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include/mirtk/Memory.h
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include/mirtk/MetaImageReader.h
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include/mirtk/MetaImageWriter.h
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include/mirtk/MirrorExtrapolateImageFunction.h
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include/mirtk/MultiLevelFreeFormTransformation.h
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include/mirtk/MultiLevelStationaryVelocityTransformation.h
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include/mirtk/MultiLevelTransformation.h
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include/mirtk/MultipleVoxelTransformation.h
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include/mirtk/MutualImageInformation.h
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include/mirtk/NaryVoxelFunction.h
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include/mirtk/NearestNeighborExtrapolateImageFunction.h
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include/mirtk/NearestNeighborInterpolateImageFunction.h
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include/mirtk/NearestNeighborInterpolateImageFunction.hxx
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include/mirtk/NegJacobianConstraint.h
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include/mirtk/NeighborhoodOffsets.h
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include/mirtk/NiftiImageInfo.h
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include/mirtk/NiftiImageReader.h
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include/mirtk/NiftiImageWriter.h
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include/mirtk/NormalizedGradientFieldSimilarity.h
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include/mirtk/NormalizedIntensityCrossCorrelation.h
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include/mirtk/NormalizedMutualImageInformation.h
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include/mirtk/Numeric.h
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include/mirtk/Numerics.h
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include/mirtk/NumericsConfig.h
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include/mirtk/NumericsExport.h
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include/mirtk/Object.h
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include/mirtk/ObjectFactory.h
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include/mirtk/ObjectiveFunction.h
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include/mirtk/Observable.h
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include/mirtk/Observer.h
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include/mirtk/OptimizationMethod.h
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include/mirtk/Options.h
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include/mirtk/OrderedMap.h
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include/mirtk/OrderedSet.h
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include/mirtk/PGMImageReader.h
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include/mirtk/PGMImageWriter.h
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include/mirtk/PNGImageWriter.h
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include/mirtk/Pair.h
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include/mirtk/Parallel.h
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include/mirtk/PartialAffineTransformation.h
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include/mirtk/PartialBSplineFreeFormTransformationSV.h
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include/mirtk/PartialMultiLevelStationaryVelocityTransformation.h
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include/mirtk/Path.h
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include/mirtk/PeakSignalToNoiseRatio.h
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include/mirtk/PeronaMalikErrorFunction.h
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include/mirtk/Plane.h
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include/mirtk/Point.h
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include/mirtk/PointCorrespondenceDistance.h
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include/mirtk/PointSamples.h
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include/mirtk/PointSet.h
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include/mirtk/PointSetDistance.h
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include/mirtk/PointSetDistanceMeasure.h
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include/mirtk/PointSetIO.h
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include/mirtk/Polynomial.h
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include/mirtk/PolynomialSolvers.h
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include/mirtk/PriorityQueue.h
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include/mirtk/Profiling.h
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include/mirtk/Queue.h
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include/mirtk/RadialErrorFunction.h
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include/mirtk/Random.h
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include/mirtk/RegisteredImage.h
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include/mirtk/Registration.h
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include/mirtk/RegistrationConfig.h
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include/mirtk/RegistrationEnergy.h
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include/mirtk/RegistrationExport.h
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include/mirtk/RegistrationFilter.h
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include/mirtk/RepeatExtrapolateImageFunction.h
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include/mirtk/Resampling.h
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include/mirtk/ResamplingWithPadding.h
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include/mirtk/RigidTransformation.h
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include/mirtk/ScalarFunction.h
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include/mirtk/ScalarFunctionToImage.h
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include/mirtk/ScalarGaussian.h
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include/mirtk/ScalingAndSquaring.h
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include/mirtk/SeparableConvolution.h
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include/mirtk/ShapeBasedInterpolateImageFunction.h
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include/mirtk/SimilarityMeasure.h
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include/mirtk/SimilarityTransformation.h
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include/mirtk/Sinc.h
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include/mirtk/SincInterpolateImageFunction.h
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include/mirtk/SincInterpolateImageFunction.hxx
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include/mirtk/SincInterpolateImageFunction2D.h
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include/mirtk/SincInterpolateImageFunction2D.hxx
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include/mirtk/SincInterpolateImageFunction3D.h
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include/mirtk/SincInterpolateImageFunction3D.hxx
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include/mirtk/SincInterpolateImageFunction4D.h
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include/mirtk/SincInterpolateImageFunction4D.hxx
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include/mirtk/SmoothnessConstraint.h
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include/mirtk/SparseMatrix.h
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include/mirtk/SparsityConstraint.h
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include/mirtk/SquaredErrorFunction.h
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include/mirtk/Stack.h
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include/mirtk/Status.h
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include/mirtk/StoppingCriterion.h
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include/mirtk/Stream.h
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include/mirtk/String.h
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include/mirtk/SumOfSquaredIntensityDifferences.h
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include/mirtk/SurfaceDistance.h
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include/mirtk/System.h
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include/mirtk/Terminal.h
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include/mirtk/TernaryVoxelFunction.h
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include/mirtk/TestProd.h
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include/mirtk/TopologyPreservationConstraint.h
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include/mirtk/Transformation.h
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include/mirtk/TransformationApproximationError.h
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include/mirtk/TransformationConfig.h
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include/mirtk/TransformationConstraint.h
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include/mirtk/TransformationExport.h
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include/mirtk/TransformationJacobian.h
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include/mirtk/TransformationModel.h
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include/mirtk/TransformationType.h
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include/mirtk/Transformations.h
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include/mirtk/Umfpack.h
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include/mirtk/UnaryVoxelFunction.h
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include/mirtk/UnorderedMap.h
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include/mirtk/UnorderedSet.h
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include/mirtk/Utils.h
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include/mirtk/Vector.h
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include/mirtk/Vector3.h
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include/mirtk/Vector3D.h
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include/mirtk/Vector4D.h
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include/mirtk/VectorND.h
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include/mirtk/VelocityFieldExp.h
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include/mirtk/VelocityToDisplacementField.h
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include/mirtk/VelocityToDisplacementFieldEuler.h
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include/mirtk/VelocityToDisplacementFieldSS.h
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include/mirtk/Version.h
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include/mirtk/VersionInfo.h
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include/mirtk/VolumePreservationConstraint.h
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include/mirtk/Voxel.h
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include/mirtk/VoxelCast.h
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include/mirtk/VoxelDomain.h
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include/mirtk/VoxelFunction.h
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include/mirtk/Vtk.h
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include/mirtk/VtkMath.h
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lib/cmake/mirtk/MIRTKApplicationsConfig.cmake
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lib/cmake/mirtk/MIRTKApplicationsUse.cmake
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lib/cmake/mirtk/MIRTKCommonConfig.cmake
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lib/cmake/mirtk/MIRTKCommonUse.cmake
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lib/cmake/mirtk/MIRTKConfig.cmake
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lib/cmake/mirtk/MIRTKConfigVersion.cmake
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lib/cmake/mirtk/MIRTKCustomTargets.cmake
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lib/cmake/mirtk/MIRTKIOConfig.cmake
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lib/cmake/mirtk/MIRTKIOUse.cmake
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lib/cmake/mirtk/MIRTKImageConfig.cmake
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lib/cmake/mirtk/MIRTKImageUse.cmake
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lib/cmake/mirtk/MIRTKNumericsConfig.cmake
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lib/cmake/mirtk/MIRTKNumericsUse.cmake
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lib/cmake/mirtk/MIRTKRegistrationConfig.cmake
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lib/cmake/mirtk/MIRTKRegistrationUse.cmake
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lib/cmake/mirtk/MIRTKTargets-%%CMAKE_BUILD_TYPE%%.cmake
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lib/cmake/mirtk/MIRTKTargets.cmake
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lib/cmake/mirtk/MIRTKTransformationConfig.cmake
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lib/cmake/mirtk/MIRTKTransformationUse.cmake
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lib/cmake/mirtk/MIRTKUse.cmake
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lib/mirtk/libMIRTKCommon.so
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lib/mirtk/libMIRTKCommon.so.0
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lib/mirtk/libMIRTKCommon.so.0.0.0
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lib/mirtk/libMIRTKIO.so
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lib/mirtk/libMIRTKIO.so.0
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lib/mirtk/libMIRTKIO.so.0.0.0
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lib/mirtk/libMIRTKImage.so
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lib/mirtk/libMIRTKImage.so.0
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lib/mirtk/libMIRTKImage.so.0.0.0
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lib/mirtk/libMIRTKNumerics.so
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lib/mirtk/libMIRTKNumerics.so.0
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lib/mirtk/libMIRTKNumerics.so.0.0.0
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lib/mirtk/libMIRTKRegistration.so
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lib/mirtk/libMIRTKRegistration.so.0
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lib/mirtk/libMIRTKRegistration.so.0.0.0
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lib/mirtk/libMIRTKTransformation.so
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lib/mirtk/libMIRTKTransformation.so.0
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lib/mirtk/libMIRTKTransformation.so.0.0.0
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lib/mirtk/python/mirtk/__init__.py
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lib/mirtk/python/mirtk/atlas/__init__.py
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lib/mirtk/python/mirtk/atlas/spatiotemporal.py
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lib/mirtk/python/mirtk/batch/__init__.py
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lib/mirtk/python/mirtk/batch/condor.py
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lib/mirtk/python/mirtk/batch/slurm.py
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lib/mirtk/python/mirtk/subprocess.py
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lib/mirtk/python/mirtk/utils.py
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lib/mirtk/tools/aggregate-images
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lib/mirtk/tools/auto-contrast
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lib/mirtk/tools/average-dofs
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lib/mirtk/tools/average-images
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lib/mirtk/tools/average-measure
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lib/mirtk/tools/average-overlap
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lib/mirtk/tools/bisect-dof
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lib/mirtk/tools/calculate-distance-map
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lib/mirtk/tools/calculate-element-wise
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lib/mirtk/tools/calculate-exponential-map
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lib/mirtk/tools/calculate-lie-bracket
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lib/mirtk/tools/calculate-logarithmic-map
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lib/mirtk/tools/close-image
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lib/mirtk/tools/combine-images
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lib/mirtk/tools/compose-dofs
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lib/mirtk/tools/construct-atlas
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lib/mirtk/tools/convert-dof
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lib/mirtk/tools/convert-image
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lib/mirtk/tools/cut-brain
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lib/mirtk/tools/detect-cardiac-phases
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lib/mirtk/tools/detect-edges
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lib/mirtk/tools/dilate-image
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lib/mirtk/tools/downsample-image
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lib/mirtk/tools/edit-dof
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lib/mirtk/tools/edit-image
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lib/mirtk/tools/erode-image
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lib/mirtk/tools/evaluate-atlas
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lib/mirtk/tools/evaluate-dof
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lib/mirtk/tools/evaluate-jacobian
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lib/mirtk/tools/evaluate-label-overlap
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lib/mirtk/tools/evaluate-overlap
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lib/mirtk/tools/evaluate-similarity
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lib/mirtk/tools/extract-connected-components
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lib/mirtk/tools/extract-image-region
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lib/mirtk/tools/extract-image-slice
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lib/mirtk/tools/extract-image-volume
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lib/mirtk/tools/flip-image
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lib/mirtk/tools/help-rst
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lib/mirtk/tools/info
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lib/mirtk/tools/init-dof
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lib/mirtk/tools/invert-dof
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lib/mirtk/tools/match-histogram
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lib/mirtk/tools/open-image
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lib/mirtk/tools/random-dof
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lib/mirtk/tools/reflect-image
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lib/mirtk/tools/register
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lib/mirtk/tools/resample-image
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lib/mirtk/tools/smooth-image
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lib/mirtk/tools/subdivide-brain-image
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lib/mirtk/tools/transform-image
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%%DATADIR%%/cmake/BashUtilities.dox
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