63e653adaa
From [1] * What is new in gsl-2.7: * fixed doc bug for gsl_histogram_min_bin (lhcsky at 163.com) * fixed bug #60335 (spmatrix test failure, J. Lamb) * fixed bug #36577 * clarified documentation on interpolation accelerators (V. Krishnan) * fixed bug #45521 (erroneous GSL_ERROR_NULL in ode-initval2, thanks to M. Sitte) * fixed doc bug #59758 * fixed bug #58202 (rstat median for n=5) * added support for native C complex number types in gsl_complex when using a C11 compiler * upgraded to autoconf 2.71, automake 1.16.3, libtool 2.4.6 * updated exponential fitting example for nonlinear least squares * added banded LU decomposition and solver (gsl_linalg_LU_band) * New functions added to the library: - gsl_matrix_norm1 - gsl_spmatrix_norm1 - gsl_matrix_complex_conjtrans_memcpy - gsl_linalg_QL: decomp, unpack - gsl_linalg_complex_QR_* (thanks to Christian Krueger) - gsl_vector_sum - gsl_matrix_scale_rows - gsl_matrix_scale_columns - gsl_multilarge_linear_matrix_ptr - gsl_multilarge_linear_rhs_ptr - gsl_spmatrix_dense_add (renamed from gsl_spmatrix_add_to_dense) - gsl_spmatrix_dense_sub - gsl_linalg_cholesky_band: solvem, svxm, scale, scale_apply - gsl_linalg_QR_UD: decomp, lssolve - gsl_linalg_QR_UU: decomp, lssolve, QTvec - gsl_linalg_QR_UZ: decomp - gsl_multifit_linear_lcurvature - gsl_spline2d_eval_extrap * bug fix in checking vector lengths in gsl_vector_memcpy (dieggsy@pm.me) * made gsl_sf_legendre_array_index() inline and documented - gsl_sf_legendre_nlm() [1] http://git.savannah.gnu.org/cgit/gsl.git/tree/NEWS PR: 256423 Exp-run by: antoine
38 lines
889 B
Makefile
38 lines
889 B
Makefile
PORTNAME= gemma
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DISTVERSION= 0.98.3
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PORTREVISION= 1
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CATEGORIES= biology
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MAINTAINER= jwb@FreeBSD.org
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COMMENT= Genome-wide Efficient Mixed Model Association
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LICENSE= GPLv3
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LICENSE_FILE= ${WRKSRC}/LICENSE
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LIB_DEPENDS= libgsl.so:math/gsl
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USES= blaslapack:openblas compiler:c++11-lang eigen:3 gmake \
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localbase:ldflags
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USE_GITHUB= yes
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GH_ACCOUNT= genetics-statistics
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GH_PROJECT= GEMMA
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MAKEFILE= ${FILESDIR}/Makefile
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# Assuming openblas is built with pthreads, not openmp
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CXXFLAGS+= -I${LOCALBASE}/include/eigen3 -DOPENBLAS -pthread
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LDFLAGS+= -lopenblas -pthread
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OPTIONS_DEFINE= EXAMPLES
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pre-configure:
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@${REINPLACE_CMD} -e 's|../bin/gemma|../gemma|' ${WRKSRC}/test/*.sh
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do-install-EXAMPLES-on:
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@${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
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(cd ${WRKSRC}/example && ${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR})
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do-test:
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(cd ${WRKSRC}/test && ${SH} test_suite.sh)
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.include <bsd.port.mk>
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