55 lines
1.4 KiB
Makefile
55 lines
1.4 KiB
Makefile
# Created by: barnhart@genetics.wustl.edu
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# $FreeBSD$
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PORTNAME= hmmer
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PORTVERSION= 3.3
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CATEGORIES= biology
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MASTER_SITES= http://eddylab.org/software/hmmer/
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MAINTAINER= mzaki@e-mail.ne.jp
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COMMENT= Profile hidden Markov models for biological sequence analysis
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LICENSE= BSD3CLAUSE
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LICENSE_FILE= ${WRKSRC}/LICENSE
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ONLY_FOR_ARCHS= amd64 i386 powerpc powerpc64 powerpcspe
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ONLY_FOR_ARCHS_REASON= requires SSE2 or AltiVec instructions
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USES= compiler:c11 gmake perl5 python:3.5+,test shebangfix
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GNU_CONFIGURE= yes
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MAKE_ARGS= V=1
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TEST_TARGET= check
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USE_PERL5= test
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SHEBANG_GLOB= *.pl *.py
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SHEBANG_FILES= easel/devkit/*
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OPTIONS_DEFINE= DOCS EXAMPLES TEST
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DOCFILES= Userguide.pdf
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EXAMPLES= 7LESS_DROME HBB_HUMAN MADE1.hmm MADE1.sto \
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Pkinase.hmm Pkinase.sto dna_target.fa fn3.hmm fn3.sto \
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globins4.hmm globins4.sto globins45.fa
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TEST_VARS= use_perl5=build
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TEST_BUILD_DEPENDS= ${PYTHON_VERSION}:lang/python${PYTHON_SUFFIX}
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post-build-TEST-on: pre-test do-test
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pre-test:
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${FIND} ${WRKSRC} -type f \( -name Makefile -or -name sqc \) -exec ${GREP} -q 'python3 ' {} \; -print | ${XARGS} ${SED} -i.bak 's/python3 /${PYTHON_VERSION} /'
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post-install:
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@${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/*
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post-install-DOCS-on:
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@${MKDIR} ${STAGEDIR}${DOCSDIR}
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${INSTALL_DATA} ${DOCFILES:S,^,${WRKSRC}/,} ${STAGEDIR}${DOCSDIR}
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post-install-EXAMPLES-on:
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@${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
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${INSTALL_DATA} ${EXAMPLES:S,^,${WRKSRC}/tutorial/,} ${STAGEDIR}${EXAMPLESDIR}
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.include <bsd.port.mk>
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