| .. |
|
2d-rewriter
|
|
|
|
abinit
|
devel/openmp: update to 9.0.0
|
2019-09-21 18:59:57 +00:00 |
|
afni
|
science/afni: Remove dependency on libXp
|
2019-09-28 10:56:15 +00:00 |
|
agrum
|
Switch default devel/llvm* to 90
|
2019-09-20 19:58:36 +00:00 |
|
aircraft-datcom
|
|
|
|
ALPSCore
|
devel/boost-*: update to 1.71.0
|
2019-08-19 15:35:27 +00:00 |
|
antioch
|
|
|
|
apbs
|
|
|
|
atom
|
|
|
|
atompaw
|
|
|
|
avogadro2
|
|
|
|
avogadrolibs
|
|
|
|
bagel
|
devel/boost-*: update to 1.71.0
|
2019-08-19 15:35:27 +00:00 |
|
bddsolve
|
devel/boost-*: update to 1.71.0
|
2019-08-19 15:35:27 +00:00 |
|
berkeleygw
|
|
|
|
bodr
|
|
|
|
brian
|
|
|
|
buddy
|
|
|
|
cdcl
|
|
|
|
cdf
|
- Switch to new test framework (note that test currently segfaults)
|
2019-08-28 09:02:41 +00:00 |
|
cdo
|
|
|
|
cgnslib
|
|
|
|
cgribex
|
|
|
|
checkmol
|
- Rebuild bootstrap (ppcx64 and ppc386) with ld patches
|
2019-09-03 15:51:50 +00:00 |
|
chemical-mime-data
|
|
|
|
chemps2
|
|
|
|
chemtool
|
|
|
|
chemtool-devel
|
|
|
|
chrono
|
devel/openmp: update to 9.0.0
|
2019-09-21 18:59:57 +00:00 |
|
clhep
|
|
|
|
clipper
|
|
|
|
code_saturne
|
devel/openmp: update to 9.0.0
|
2019-09-21 18:59:57 +00:00 |
|
colt
|
|
|
|
coordgenlibs
|
devel/boost-*: update to 1.71.0
|
2019-08-19 15:35:27 +00:00 |
|
coot
|
|
|
|
cp2k
|
|
|
|
cp2k-data
|
|
|
|
crf++
|
|
|
|
dalton
|
|
|
|
datawarrior
|
|
|
|
dcl
|
|
|
|
devisor
|
|
|
|
dftbplus
|
|
|
|
dkh
|
|
|
|
dlib-cpp
|
|
|
|
dlpoly-classic
|
Convert to UCL & cleanup pkg-message (categories s)
|
2019-08-14 12:16:12 +00:00 |
|
drawxtl
|
|
|
|
dvc
|
|
|
|
eccodes
|
Update to 2.13.1
|
2019-08-31 17:11:36 +00:00 |
|
elk
|
|
|
|
epte
|
|
|
|
erd
|
|
|
|
erkale
|
MFH: r514376
|
2019-10-13 09:03:19 +00:00 |
|
erkale-pseudopotentials
|
|
|
|
esys-particle
|
devel/boost-*: update to 1.71.0
|
2019-08-19 15:35:27 +00:00 |
|
fastcap
|
|
|
|
fasthenry
|
|
|
|
fisicalab
|
|
|
|
fleur
|
|
|
|
fsom
|
|
|
|
fvcom
|
Bump PORTREVISION for science/netcdf-fortran shlib change
|
2019-08-31 17:11:57 +00:00 |
|
fvcom-mpi
|
Bump PORTREVISION for science/netcdf-fortran shlib change
|
2019-08-31 17:11:57 +00:00 |
|
gabedit
|
devel/openmp: update to 9.0.0
|
2019-09-21 18:59:57 +00:00 |
|
gamess-us
|
Convert to UCL & cleanup pkg-message (categories s)
|
2019-08-14 12:16:12 +00:00 |
|
gchemutils
|
|
|
|
gdma
|
|
|
|
getdp
|
|
|
|
ghemical
|
|
|
|
ghmm
|
|
|
|
gnudatalanguage
|
|
|
|
gpaw-setups
|
|
|
|
gramps
|
|
|
|
grib_api
|
Mark CONFLICTS_INSTALL between science/eccodes and science/grib_api
|
2019-08-31 11:21:16 +00:00 |
|
gromacs
|
devel/openmp: update to 9.0.0
|
2019-09-21 18:59:57 +00:00 |
|
gsmc
|
|
|
|
gtamsanalyzer
|
|
|
|
gwyddion
|
|
|
|
h5utils
|
|
|
|
h5z-zfp
|
|
|
|
harminv
|
|
|
|
hdf
|
|
|
|
hdf5
|
Add PARALLEL option
|
2019-09-30 11:32:04 +00:00 |
|
hdf5-18
|
|
|
|
healpix
|
|
|
|
hypre
|
|
|
|
iboview
|
devel/boost-*: update to 1.71.0
|
2019-08-19 15:35:27 +00:00 |
|
InsightToolkit
|
science/InsightToolkit: fix build with GCC-based architectures
|
2019-09-30 10:14:18 +00:00 |
|
isaac-cfd
|
|
|
|
jdftx
|
|
|
|
jmol
|
science/jmol: Update 14.29.52 -> 14.29.53
|
2019-09-21 14:43:07 +00:00 |
|
jstrack
|
MFH: r513547
|
2019-10-02 06:57:57 +00:00 |
|
kalzium
|
KDE Applications: update to 19.08.1
|
2019-09-05 18:20:14 +00:00 |
|
kim-api
|
science/kim-api: Update 2.1.2 -> 2.1.3
|
2019-08-31 14:45:22 +00:00 |
|
kst2
|
|
|
|
lammps
|
devel/openmp: update to 9.0.0
|
2019-09-21 18:59:57 +00:00 |
|
lamprop
|
|
|
|
latte
|
devel/openmp: update to 9.0.0
|
2019-09-21 18:59:57 +00:00 |
|
libaec
|
|
|
|
libccp4
|
|
|
|
libcint
|
|
|
|
libctl
|
|
|
|
libefp
|
|
|
|
libgeodecomp
|
devel/boost-*: update to 1.71.0
|
2019-08-19 15:35:27 +00:00 |
|
libghemical
|
|
|
|
libgridxc
|
|
|
|
libint
|
|
|
|
libint2
|
devel/boost-*: update to 1.71.0
|
2019-08-19 15:35:27 +00:00 |
|
libkml
|
devel/boost-*: update to 1.71.0
|
2019-08-19 15:35:27 +00:00 |
|
liblinear
|
|
|
|
libmsym
|
|
|
|
liboglappth
|
|
|
|
libquantum
|
|
|
|
libssm
|
|
|
|
libsvm
|
Convert to UCL & cleanup pkg-message (categories s)
|
2019-08-14 12:16:12 +00:00 |
|
libsvm-python
|
|
|
|
libvdwxc
|
|
|
|
libxc
|
|
|
|
liggghts
|
|
|
|
lm
|
|
|
|
luscus
|
|
|
|
madness
|
Update devel/tbb to 2019.8 and bump dependent ports' revisions
|
2019-09-25 10:03:49 +00:00 |
|
maeparser
|
science/maeparser: Update 1.2 -> 1.2.1
|
2019-09-21 14:24:05 +00:00 |
|
massxpert
|
|
|
|
mbdyn
|
|
|
|
mcstas
|
|
|
|
mcstas-comps
|
|
|
|
mcxtrace
|
|
|
|
mcxtrace-comps
|
|
|
|
mdynamix
|
|
|
|
medit
|
|
|
|
meep
|
|
|
|
metaf2xml
|
Deprecate a few ports
|
2019-09-15 17:28:08 +00:00 |
|
metaphysicl
|
|
|
|
minc2
|
|
|
|
mmdb2
|
|
|
|
mmtf-cpp
|
|
|
|
mol2ps
|
- Rebuild bootstrap (ppcx64 and ppc386) with ld patches
|
2019-09-03 15:51:50 +00:00 |
|
molgif
|
Go ports: cleanup, finish transition to USES=go started with r505321 (cat. misc-shells)
|
2019-09-29 22:31:57 +00:00 |
|
molscript
|
|
|
|
molsketch
|
|
|
|
mpb
|
|
|
|
mpqc
|
|
|
|
msms
|
|
|
|
multiwfn
|
|
|
|
namd
|
|
|
|
ncnn
|
science/ncnn: 20190611-113 -> 20190908
|
2019-09-15 00:36:39 +00:00 |
|
nest
|
devel/openmp: update to 9.0.0
|
2019-09-21 18:59:57 +00:00 |
|
netcdf
|
Update to 4.7.1
|
2019-08-31 17:11:41 +00:00 |
|
netcdf-cxx
|
Update to 4.3.1
|
2019-09-12 19:06:48 +00:00 |
|
netcdf-fortran
|
Update to 4.5.2
|
2019-09-26 18:13:09 +00:00 |
|
nifticlib
|
|
|
|
nwchem
|
science/nwchem: Update 6.8.1.20190816 (b8ef5a23b) -> 6.8.1.20190820 (2450e37ef)
|
2019-08-21 05:43:55 +00:00 |
|
nwchem-data
|
|
|
|
octopus
|
|
|
|
openbabel
|
|
|
|
openkim
|
|
|
|
openkim-models
|
Add compiler:c++11-lang to USES to fix build on gcc-based architectures:
|
2019-08-11 00:13:02 +00:00 |
|
openmx
|
devel/openmp: update to 9.0.0
|
2019-09-21 18:59:57 +00:00 |
|
opensim-core
|
science/opensim-core: Add the JAVA option that adds the Java binding
|
2019-08-24 22:09:03 +00:00 |
|
opensph
|
|
|
|
opsin
|
|
|
|
p5-Algorithm-SVMLight
|
|
|
|
p5-Chemistry-3DBuilder
|
|
|
|
p5-Chemistry-Bond-Find
|
|
|
|
p5-Chemistry-Canonicalize
|
|
|
|
p5-Chemistry-Elements
|
|
|
|
p5-Chemistry-File-MDLMol
|
|
|
|
p5-Chemistry-File-Mopac
|
|
|
|
p5-Chemistry-File-PDB
|
|
|
|
p5-Chemistry-File-SLN
|
|
|
|
p5-Chemistry-File-SMARTS
|
|
|
|
p5-Chemistry-File-SMILES
|
|
|
|
p5-Chemistry-File-VRML
|
|
|
|
p5-Chemistry-File-XYZ
|
|
|
|
p5-Chemistry-FormulaPattern
|
|
|
|
p5-Chemistry-InternalCoords
|
|
|
|
p5-Chemistry-Isotope
|
|
|
|
p5-Chemistry-MacroMol
|
|
|
|
p5-Chemistry-MidasPattern
|
|
|
|
p5-Chemistry-Mok
|
|
|
|
p5-Chemistry-Mol
|
|
|
|
p5-Chemistry-Pattern
|
|
|
|
p5-Chemistry-Reaction
|
|
|
|
p5-Chemistry-Ring
|
|
|
|
p5-Geo-BUFR
|
|
|
|
p5-Geo-Coordinates-Converter
|
|
|
|
p5-Geo-Coordinates-Converter-iArea
|
|
|
|
p5-Geo-ReadGRIB
|
|
|
|
p5-Geo-WebService-Elevation-USGS
|
Update to 0.115
|
2019-09-03 19:12:19 +00:00 |
|
p5-Mcstas-Tools
|
|
|
|
p5-PerlMol
|
|
|
|
p5-Physics-Unit
|
|
|
|
packmol
|
science/packmol: Pack molecules in defined regions of space
|
2019-09-22 19:06:43 +00:00 |
|
pagmo2
|
devel/boost-*: update to 1.71.0
|
2019-08-19 15:35:27 +00:00 |
|
paje
|
|
|
|
paraview
|
|
|
|
pcmsolver
|
|
|
|
PETSc
|
science/PETSc: unbreak on ARM platforms
|
2019-09-15 10:39:17 +00:00 |
|
pnetcdf
|
|
|
|
psychopy
|
|
|
|
pulseview
|
devel/boost-*: update to 1.71.0
|
2019-08-19 15:35:27 +00:00 |
|
py-abipy
|
|
|
|
py-asdf
|
Change RUN_DEPENDS from py-semantic_version to py-semantic_version26
|
2019-09-26 18:16:28 +00:00 |
|
py-ase
|
science/py-ase: Update 3.18.0 -> 3.18.1
|
2019-09-21 14:18:58 +00:00 |
|
py-avogadrolibs
|
|
|
|
py-cdo
|
|
|
|
py-chainer
|
science/py-chainer: Update 6.2.0 -> 6.3.0
|
2019-08-25 19:14:49 +00:00 |
|
py-chainer-chemistry
|
Revert r508450
|
2019-08-09 18:34:46 +00:00 |
|
py-chempy
|
|
|
|
py-coards
|
|
|
|
py-DendroPy
|
Convert to UCL & cleanup pkg-message (categories s)
|
2019-08-14 12:16:12 +00:00 |
|
py-dlib
|
devel/boost-*: update to 1.71.0
|
2019-08-19 15:35:27 +00:00 |
|
py-eccodes-python
|
|
|
|
py-geometer
|
Update to 0.2.0
|
2019-09-25 20:41:50 +00:00 |
|
py-gpaw
|
Convert to UCL & cleanup pkg-message (categories s)
|
2019-08-14 12:16:12 +00:00 |
|
py-GPy
|
devel/openmp: update to 9.0.0
|
2019-09-21 18:59:57 +00:00 |
|
py-GPyOpt
|
|
|
|
py-gsd
|
science/py-gsd: Update 1.7.0 -> 1.8.1
|
2019-08-20 06:47:39 +00:00 |
|
py-h5py
|
Update to 2.10.0
|
2019-09-07 22:44:39 +00:00 |
|
py-hcluster
|
|
|
|
py-kinematics
|
|
|
|
py-lifelines
|
|
|
|
py-MDAnalysis
|
|
|
|
py-MDAnalysisTests
|
|
|
|
py-mdp
|
|
|
|
py-mlpy
|
|
|
|
py-mmtf-python
|
|
|
|
py-molmod
|
|
|
|
py-netCDF4
|
|
|
|
py-obspy
|
|
|
|
py-oddt
|
|
|
|
py-OpenFermion
|
science/py-OpenFermion: Update 0.9.0 -> 0.10.0
|
2019-08-19 10:17:11 +00:00 |
|
py-openpiv
|
|
|
|
py-paida
|
|
|
|
py-paramz
|
|
|
|
py-phono3py
|
devel/openmp: update to 9.0.0
|
2019-09-21 18:59:57 +00:00 |
|
py-phonopy
|
science/py-phonopy: Update 2.2.0 -> 2.3.0
|
2019-08-31 06:06:51 +00:00 |
|
py-pupynere
|
|
|
|
py-pyaixi
|
|
|
|
py-pydicom
|
- Update to 1.3.0
|
2019-09-04 02:25:53 +00:00 |
|
py-PyFR
|
devel/openmp: update to 9.0.0
|
2019-09-21 18:59:57 +00:00 |
|
py-pygeodesy
|
|
|
|
py-pymatgen
|
|
|
|
py-pymol
|
|
|
|
py-pyosf
|
|
|
|
py-PyQuante
|
|
|
|
py-pysal
|
|
|
|
py-pyteomics
|
|
|
|
py-pyteomics.biolccc
|
|
|
|
py-qcelemental
|
science/py-qcelemental: Update 0.6.1 -> 0.7.0
|
2019-08-31 06:11:10 +00:00 |
|
py-qcengine
|
science/py-qcengine: Update 0.8.2 -> 0.10.0
|
2019-08-31 06:12:38 +00:00 |
|
py-qspin
|
|
|
|
py-quantities
|
|
|
|
py-rmf
|
|
|
|
py-rmsd
|
|
|
|
py-ruffus
|
science/py-ruffus: Update to 2.8.3
|
2019-08-15 21:30:19 +00:00 |
|
py-ScientificPython
|
|
|
|
py-scikit-fuzzy
|
|
|
|
py-scikit-learn
|
|
|
|
py-scikit-sparse
|
|
|
|
py-scimath
|
|
|
|
py-scipy
|
|
|
|
py-scoria
|
|
|
|
py-SimpleSpectral
|
|
|
|
py-spglib
|
science/py-spglib: Update 1.13.0 -> 1.14.1
|
2019-08-31 15:13:52 +00:00 |
|
py-tensorflow
|
Mark BROKEN
|
2019-09-08 05:49:32 +00:00 |
|
py-tensorflow-estimator
|
science/py-tensorflow-estimator: Add NO_ARCH=yes; Fix build for the port name having hyphen (vs. underscore) in PORTNAME.
|
2019-08-13 00:00:42 +00:00 |
|
py-veusz
|
|
|
|
py-ws2300
|
|
|
|
pybrain
|
|
|
|
pycdf
|
|
|
|
pynn
|
|
|
|
qbox
|
science/qbox: Update 1.67.4 -> 1.68.0
|
2019-09-21 06:35:02 +00:00 |
|
qcl
|
|
|
|
qmcpack
|
devel/openmp: update to 9.0.0
|
2019-09-21 18:59:57 +00:00 |
|
quantum-espresso
|
|
|
|
quantum-espresso-pseudopotentials
|
|
|
|
qwalk
|
|
|
|
R-cran-AMORE
|
|
|
|
R-cran-bayesm
|
- Update to 3.1.3
|
2019-08-25 12:24:25 +00:00 |
|
R-cran-cmprsk
|
|
|
|
R-cran-DCluster
|
|
|
|
R-cran-e1071
|
|
|
|
R-cran-eco
|
|
|
|
R-cran-Epi
|
- Update to 2.38
|
2019-09-26 10:50:23 +00:00 |
|
R-cran-epicalc
|
|
|
|
R-cran-etm
|
|
|
|
R-cran-fastICA
|
|
|
|
R-cran-kernlab
|
|
|
|
R-cran-snow
|
|
|
|
R-cran-som
|
|
|
|
R-cran-udunits2
|
|
|
|
rdkit
|
science/rdkit: fix build on GCC architectures
|
2019-08-20 00:08:48 +00:00 |
|
rmf
|
devel/boost-*: update to 1.71.0
|
2019-08-19 15:35:27 +00:00 |
|
rubygem-ai4r
|
|
|
|
rubygem-cdo
|
|
|
|
rubygem-rgeo
|
Update to 2.1.1
|
2019-08-28 23:53:27 +00:00 |
|
rubygem-rgeo-geojson
|
|
|
|
rubygem-rgeo-proj4
|
Update version requirement of RUN_DEPENDS
|
2019-08-28 23:53:32 +00:00 |
|
rubygem-rgeo-shapefile
|
|
|
|
rubygem-ruby-dcl
|
|
|
|
rubygem-ruby-netcdf
|
|
|
|
scidavis
|
|
|
|
siesta
|
|
|
|
sigrok-cli
|
|
|
|
sigrok-firmware
|
|
|
|
sigrok-firmware-fx2lafw
|
|
|
|
sigrok-firmware-utils
|
|
|
|
silo
|
|
|
|
simbody
|
science/simbody: Backport the pull request that fixed the pathname handling on BSDs, and one failing testcase.
|
2019-08-08 04:53:25 +00:00 |
|
simgrid
|
devel/boost-*: update to 1.71.0
|
2019-08-19 15:35:27 +00:00 |
|
simint
|
|
|
|
simlib
|
|
|
|
simsmith
|
|
|
|
smoldyn
|
|
|
|
sparta
|
science/sparta: Update 16Apr2019 -> 9Sep2019
|
2019-09-10 03:18:50 +00:00 |
|
spglib
|
|
|
|
step
|
KDE Applications: update to 19.08.1
|
2019-09-05 18:20:14 +00:00 |
|
svmlight
|
|
|
|
szip
|
|
|
|
teem
|
|
|
|
tfel
|
devel/boost-*: update to 1.71.0
|
2019-08-19 15:35:27 +00:00 |
|
tinker
|
Convert to UCL & cleanup pkg-message (categories s)
|
2019-08-14 12:16:12 +00:00 |
|
udunits
|
|
|
|
v_sim
|
|
|
|
vipster
|
|
|
|
vmd
|
science/vmd: Add USES=gl
|
2019-08-15 16:06:32 +00:00 |
|
voro++
|
|
|
|
wannier90
|
|
|
|
wwplot
|
science/wwplot: Update 0.0.6 -> 0.0.7
|
2019-08-18 16:49:45 +00:00 |
|
wxmacmolplt
|
|
|
|
xcrysden
|
|
|
|
xdrawchem
|
|
|
|
xfce4-equake-plugin
|
Welcome XFCE 4.14 to the FreeBSD ports tree
|
2019-09-19 23:46:33 +00:00 |
|
xmakemol
|
Depreacte libGLw and dependent ports
|
2019-09-07 08:34:53 +00:00 |
|
yoda
|
|
|
|
Makefile
|
science/packmol: Pack molecules in defined regions of space
|
2019-09-22 19:06:43 +00:00 |
