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622 Commits

Author SHA1 Message Date
Mark Linimon
e22ed3d655 With portmgr hat on, reset inactive maintainer. These ports are now up 
for adoption.
 2004-11-20 08:09:49 +00:00
Mark Linimon
9f305c48e4 With portmgr hat on, reset inactive maintainer. 2004-11-20 07:40:43 +00:00
Pav Lucistnik
775ed95279 - Distfiles change every few days, so drop md5 checking on them 
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
 2004-11-18 07:58:41 +00:00
Pav Lucistnik
cfaac59499 Add blast, a powerful software package for gene and protein identification, 
using sensitive, selective and rapid similarity searches of protein and
nucleotide sequence databases.

PR:		ports/69636
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar>
 2004-11-11 21:35:04 +00:00
Joe Marcus Clarke
46a4d69571 Bump PORTREVISIONS for all ports that depend on atk or pango to ease in the 
big upgrade.
 2004-11-07 22:37:47 +00:00
Pav Lucistnik
6743d66769 - Fix build on amd64 (crude hack to pass -fPIC to c++ compiles) 
Reported by:	pointyhat via kris
Tested on:	arved's box
 2004-11-06 23:12:14 +00:00
Kevin Lo
53d3206a26 Update to 3.14 
PR: ports/72422
Submitted by: Choe, Cheng-Dae <whitekid@gmail.com>
 2004-11-06 03:55:37 +00:00
Jeremy Messenger
4962101ad1 Correct a typo: s/linux-opera/linux-openmotif/g. 2004-11-01 22:26:55 +00:00
Pav Lucistnik
74b56bc3f6 - Update to 2004.06.16 
Inspired by:	ports/72726
Approved by:	maintainer timeout (2 weeks)
 2004-11-01 22:21:02 +00:00
Jeremy Messenger
174d059edf Chase the linux-openmotif shared library version and mark biology/spdbv as 
broke, I get no respone from the maintainer since Oct 22, 2004. The
www/linux-opera works fine with new linux-openmotif. Also, bump PORTREVISION.

To fix or update for biology/spdbv is welcome, I shall commit them if I get
patch(es) in my Inbox.
 2004-11-01 21:25:10 +00:00
Kris Kennaway
1438099ab0 Now installs on FreeBSD 5.x. 2004-10-28 21:01:05 +00:00
Pav Lucistnik
7d98b3c8b4 - Update to 1.30 
PR:		ports/71400
Submitted by:	Stefan Walter <sw@gegenunendlich.de>
Approved by:	maintainer timeout (2 months)
 2004-10-27 20:39:17 +00:00
Maho Nakata
df33287cc1 Avoid the use of != statements in ports Makefile 
PR:		71095
Submitted by:	eik
 2004-10-24 03:37:02 +00:00
Pav Lucistnik
bd787bee6f - Update to 3.62 
- Install font files

PR:		ports/72212
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar>
Approved by:	David A. Bader <dbader@ece.unm.edu> (maintainer)
 2004-10-11 22:26:34 +00:00
Kris Kennaway
90abb24f53 BROKEN on 5.x: Does not compile 
Approved by:    portmgr (self)
 2004-09-29 05:45:34 +00:00
Thierry Thomas
22a6a2b711 Upgrade to latest revision to make fetchable again. 
Approved by:	portmgr (marcus)
 2004-09-25 08:06:08 +00:00
Thierry Thomas
c6723a8a1a Update config.h and unbreak. 
PR:		ports/71505
Submitted by:	maintainer
Approved by:	portmgr (marcus).
 2004-09-24 05:22:57 +00:00
Alexey Dokuchaev
dbc388ef77 The build should be fixed now, so remove BROKEN mark. 
Approved by:	portmgr (marcus), fjoe (mentor, implicit)
 2004-09-23 07:10:32 +00:00
Kris Kennaway
5c6f51f8b9 BROKEN on 5.x: Does not compile 
Approved by:    portmgr (self)
 2004-09-19 01:33:42 +00:00
Kris Kennaway
4147818b89 BROKEN on 5.x: Does not install 
Approved by:	portmgr (self)
 2004-09-19 01:18:56 +00:00
Kris Kennaway
de0cb02f0c BROKEN on 5.x: Does not install 
Approved by:    portmgr (self)
 2004-09-18 16:35:47 +00:00
Alexey Dokuchaev
6155fc8ed5 Unbreak the build on 5.X and -CURRENT. 
Reported by:	pointyhat.freebsd.org
Approved by:	portmgr (marcus), fjoe (mentor, implicit)
 2004-09-18 08:14:56 +00:00
Kris Kennaway
e9cb0e0ba3 BROKEN on 5.x: Does not compile 
Approved by:    portmgr (self)
 2004-09-17 22:47:50 +00:00
Yen-Ming Lee
1c60fe9d1f - add missing MAN1 and MAN3 
- apply DATADIR, EXAMPLESDIR, and DOCSDIR in PLIST
- update the usage of NOPORTDOCS

PR:		71322
Submitted by:	leeym
Approved by:	Fernan Aguero <fernan@iib.unsam.edu.ar>
 2004-09-03 17:04:38 +00:00
Thierry Thomas
33975deea1 - Unbreak by upgrading to 4.2; 
- Use DIST_SUBDIR because tarball is not versioned;

- Add sysdate to PORTVERSION to handle minor revisions;

- Do some cleaning.
 2004-08-19 22:24:21 +00:00
Edwin Groothuis
340ed0fa0d biology/lsysexp is not broken 
fix gtk build error

PR:		ports/70598
Submitted by:	David Yeske <dyeske@yahoo.com>
 2004-08-18 01:47:39 +00:00
Kris Kennaway
bc18221e59 This is now buildable on 5.x, remove BROKEN. 2004-08-17 10:29:40 +00:00
Mathieu Arnold
3a7b17911b After devel/p5-File-Temp has gained an IGNORE for PERL_LEVEL > 500800, all 
these ports were broken because they always depended on it. I've rearranged all
the dependencies to fit the new scheme.
 2004-08-12 12:48:01 +00:00
Pav Lucistnik
679e4b3ae4 - Update to 5.2 
PR:		ports/69799
Submitted by:	Jan Lentfer <Jan.Lentfer@web.de> (maintainer)
 2004-07-30 22:02:00 +00:00
Eric Anholt
b78a6067e6 Use X_IMAKE_PORT instead of dist-specific imake dependencies. While here, 
make the BROKEN message a little more informative.
 2004-07-23 20:31:09 +00:00
Kirill Ponomarev
1d6c8de438 Update to version 2.7.2.1.1 
PR:		ports/68861
Submitted by:	Ports Fury
 2004-07-09 18:01:11 +00:00
Joe Marcus Clarke
9e5632dd66 Apply a big libtool patch to allow porters to use the libtool installed by 
the libtoolX ports instead of the one included with each port.  Ports that
set USE_LIBTOOL_VER=X will now use the ports version of libtool instead of
the included version.  To restore previous behavior, use the new macro,
USE_INC_LIBTOOL_VER.  Both macros accept the same argument: a libtool version.

For example, to use the ports version of libtool-1.5, add the following to
your Makefile:

USE_LIBTOOL_VER=        15

To use the included version of libtool with extra hacks provided by
libtool-1.5, add the following to your Makefile:

USE_INC_LIBTOOL_VER=    15

With this change, ports that had to add additional libtool hacks to prevent
.la files from being installed or to fix certain threading issues can now
delete those hacks (after appropriate testing, of course).

PR:		63944
Based on work by:eik and marcus
Approved by:	ade (autotools maintainer)
Tested by:	kris on pointyhat
Bound to be hidden problems:	You bet
 2004-07-09 17:43:11 +00:00
Volker Stolz
9c3292f5bd Fix distsite 
PR:		ports/67473
Submitted by:	Roman Neuhauser
Approved by:	maintainer timeout
 2004-07-06 14:31:55 +00:00
Kris Kennaway
1b8fea6d1c BROKEN: Checksum mismatch 2004-07-03 09:53:15 +00:00
Volker Stolz
2353cd2094 Update to 4.6 
PR:		ports/68561
Submitted by:	maintainer
 2004-07-02 09:53:25 +00:00
Kris Kennaway
6212ab4dc6 BROKEN: Does not build 2004-07-02 08:20:02 +00:00
Mark Linimon
44c1e6c9af Update to fix fetch. Rework PORTVERSION to be more like biology/fasta3 
and pacify portlint.

PR:		ports/67428
Submitted by:	Roman Neuhauser <neuhauser at chello dot cz>
Approved by:	maintainer timeout (one month)
 2004-07-01 06:24:01 +00:00
Mark Linimon
11bda5392b Chase mastersite and fix checksum to unbreak. (Changes are inclusion of a 
logfile, one Linux-only change, and one change in a test script).  Assign
submitter as new maintainer as current one has not responded to PRs for
some time.

PR:		ports/68199
Submitted by:	Fernan Aguero <fernan at iib dot unsam dot edu dot ar>
 2004-07-01 03:02:23 +00:00
Mark Linimon
3152da13d8 Update to 1.7.6.1. 
PR:		ports/67429
Submitted by:	Roman Neuhauser <neuhauser at chello dot cz>
Approved by:	maintainer timeout (4 weeks)
 2004-06-30 06:55:56 +00:00
Mario Sergio Fujikawa Ferreira
70a15e78fc Drop maintainership 2004-06-24 14:28:12 +00:00
Volker Stolz
0eccc87d44 Fix MASTER_SITES: 
- add trailing slash
 - ftp.ebi.ac.uk only has 2.8.0

PR:		ports/67427
Submitted by:	Roman Neuhauser
Approved by:	maintainer timeout
 2004-06-23 08:20:21 +00:00
Kirill Ponomarev
bd7a90118c Add ariadne 1.3, programs to compare protein sequences and 
profiles, using the Smith-Waterman algorithm.

PR:		ports/67811
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar>
 2004-06-22 14:29:59 +00:00
Kris Kennaway
3c088f1b9a Set an expiry date of 2004-08-20 for these BROKEN/IGNORE/FORBIDDEN 
ports.  They will be removed on or after that date if they are still
broken and no fix has been submitted to GNATS.
 2004-06-21 21:27:46 +00:00
Kris Kennaway
6c65e16111 BROKEN: Checksum mismatch 2004-06-20 08:40:40 +00:00
Eric Anholt
50a90d3074 Replace explicit imake dependency with USE_IMAKE=yes 2004-06-18 03:36:32 +00:00
Mario Sergio Fujikawa Ferreira
8248f42a4a Update to 20040613 release 2004-06-13 15:40:24 +00:00
Kirill Ponomarev
2142b7d7c5 - Remove obsolete MASTER_SITES 
PR:		ports/67690
Submitted by:	Roman Neuhauser <neuhauser@chello.cz>
 2004-06-08 08:19:40 +00:00
Pav Lucistnik
02953055d8 - Update MASTER_SITES 
PR:		ports/67472
Submitted by:	Roman Neuhauser <neuhauser@chello.cz>
 2004-06-02 03:32:57 +00:00
Edwin Groothuis
60bb63b450 [PATCH] biology/mopac patchsite fix 
this is a followup to ports/67432

	I completely overlooked the fact that the port was setting
	PATCH_SITES, here's a fix for that

	maintainer cc'd

PR:		ports/67441
Submitted by:	Roman Neuhauser <neuhauser@chello.cz>
 2004-06-01 08:07:15 +00:00
Edwin Groothuis
7f8badbf19 [PATCH] biology/mopac distsite fix 
connection refused (portsurvey reports timeouts)

PR:		ports/67432
Submitted by:	Roman Neuhauser <neuhauser@chello.cz>
 2004-06-01 02:28:01 +00:00