math/R-cran-XLConnect: upgrade to 1.0.7

Changelog at <https://cran.r-project.org/web/packages/XLConnect/NEWS>.

math/R-cran-XLConnect/Makefile

@@ -1,5 +1,5 @@
 PORTNAME=	XLConnect
-PORTVERSION=	1.0.6
+PORTVERSION=	1.0.7
 CATEGORIES=	math
 DISTNAME=	${PORTNAME}_${PORTVERSION}
 
@@ -22,9 +22,9 @@ RUN_DEPENDS=	R-cran-rJava>0:devel/R-cran-rJava	\
 USES=		cran
 USE_JAVA=	yes
 
-DEP_JARS=	commons-codec commons-collections4 commons-compress	\
-		ooxml-schemas poi poi-ooxml poi-ooxml-full		\
-		SparseBitSet xmlbeans
+DEP_JARS=	commons-codec commons-collections4 commons-compress commons-io	\
+		log4j-api log4j-core poi poi-ooxml poi-ooxml-full SparseBitSet	\
+		xmlbeans
 
 post-install:
 .for j in ${DEP_JARS}
@@ -32,5 +32,7 @@ post-install:
 .endfor
 	${LN} -sf ${JAVALIBDIR}/commons-math.jar	\
 		${STAGEDIR}${PREFIX}/${R_MOD_DIR}/java/commons-math3.jar
+	${LN} -sf ${JAVALIBDIR}/commons-codec.jar	\
+		${STAGEDIR}${PREFIX}/${R_MOD_DIR}/java/commons-codec-1.15.jar
 
 .include <bsd.port.mk>

math/R-cran-XLConnect/distinfo

@@ -1,3 +1,3 @@
-TIMESTAMP = 1666384262
-SHA256 (XLConnect_1.0.6.tar.gz) = b233b9f74d1464b78d5dd28bd8a1fa46ca6254518da2d3bda3c978a3f4aaa4f9
-SIZE (XLConnect_1.0.6.tar.gz) = 1467604
+TIMESTAMP = 1674668978
+SHA256 (XLConnect_1.0.7.tar.gz) = 821dba231c3c3147455e7525119b51e5dc001984c638b7ce519d0974b32de677
+SIZE (XLConnect_1.0.7.tar.gz) = 1478915

math/R-cran-XLConnect/files/patch-R_onLoad.R

@@ -1,4 +1,4 @@
---- R/onLoad.R.orig	2022-10-20 08:32:02 UTC
+--- R/onLoad.R.orig	2023-01-24 09:49:21 UTC
 +++ R/onLoad.R
 @@ -55,47 +55,7 @@
      repo <- "https://repo1.maven.org/maven2"
@@ -19,7 +19,7 @@
 -      paste0(apachePrefix, "/commons/commons-compress/1.21/commons-compress-1.21.jar"), "commons-compress.jar",
 -      "1\\.(1[8-9]|[2-9][0-9]).*",  libname, pkgname, debianpkg = "libcommons-compress-java", rpmpkg="apache-commons-compress"),
 -    xlcEnsureDependenciesFor(
--      paste0(apachePrefix, "/xmlbeans/xmlbeans/5.0.3/xmlbeans-5.0.3.jar"), "xmlbeans.jar",
+-      paste0(apachePrefix, "/xmlbeans/xmlbeans/5.1.1/xmlbeans-5.1.1.jar"), "xmlbeans.jar",
 -      "5\\..*",  libname, pkgname, debianpkg="libxmlbeans-java"),
 -    xlcEnsureDependenciesFor(
 -      paste0(apachePrefix, "/commons/commons-collections4/4.4/commons-collections4-4.4.jar"), "commons-collections4.jar",
@@ -28,7 +28,7 @@
 -      paste0(apachePrefix, "/commons/commons-math3/3.6.1/commons-math3-3.6.1.jar"), "commons-math3.jar",
 -      "3\\.([6-9]|1[0-9]).*",  libname, pkgname, debianpkg="libcommons-math3-java"),
 -    xlcEnsureDependenciesFor(
--      paste0(apachePrefix, "/logging/log4j/log4j-api/2.17.2/log4j-api-2.17.2.jar"), "log4j-api.jar",
+-      paste0(apachePrefix, "/logging/log4j/log4j-api/2.18.0/log4j-api-2.18.0.jar"), "log4j-api.jar",
 -      "2.17.2",  libname, pkgname),
 -    xlcEnsureDependenciesFor(
 -      paste0(repo, "/commons-codec/commons-codec/1.15/commons-codec-1.15.jar"), "commons-codec-1.15.jar",

math/R-cran-XLConnect/pkg-plist

@@ -58,12 +58,15 @@
 %%R_MOD_DIR%%/html/R.css
 %%R_MOD_DIR%%/java/SparseBitSet.jar
 %%R_MOD_DIR%%/java/XLConnect-1.0.6.jar
+%%R_MOD_DIR%%/java/commons-codec-1.15.jar
 %%R_MOD_DIR%%/java/commons-codec.jar
 %%R_MOD_DIR%%/java/commons-collections4.jar
 %%R_MOD_DIR%%/java/commons-compress.jar
+%%R_MOD_DIR%%/java/commons-io.jar
 %%R_MOD_DIR%%/java/commons-math3.jar
 %%R_MOD_DIR%%/java/curvesapi-1.07.jar
-%%R_MOD_DIR%%/java/ooxml-schemas.jar
+%%R_MOD_DIR%%/java/log4j-api.jar
+%%R_MOD_DIR%%/java/log4j-core.jar
 %%R_MOD_DIR%%/java/poi-ooxml-full.jar
 %%R_MOD_DIR%%/java/poi-ooxml.jar
 %%R_MOD_DIR%%/java/poi.jar
@@ -71,6 +74,7 @@
 %%R_MOD_DIR%%/tests/run_tests.R
 %%R_MOD_DIR%%/unitTests/resources/testBug106.xlsx
 %%R_MOD_DIR%%/unitTests/resources/testBug170.xlsx
+%%R_MOD_DIR%%/unitTests/resources/testBug181.xlsx
 %%R_MOD_DIR%%/unitTests/resources/testBug49.xlsx
 %%R_MOD_DIR%%/unitTests/resources/testBug52.xlsx
 %%R_MOD_DIR%%/unitTests/resources/testBug53.xlsx
@@ -129,6 +133,7 @@
 %%R_MOD_DIR%%/unitTests/runit.workbook.setForceFormulaRecalculation.R
 %%R_MOD_DIR%%/unitTests/runit.workbook.setMissingValue.R
 %%R_MOD_DIR%%/unitTests/runit.workbook.setSheetPos.R
+%%R_MOD_DIR%%/unitTests/runit.workbook.testBug181.R
 %%R_MOD_DIR%%/unitTests/runit.workbook.writeNamedRegion.R
 %%R_MOD_DIR%%/unitTests/runit.workbook.writeWorksheet.R
 %%R_MOD_DIR%%/unitTests/runit.writeAndReadNamedRegion.R