math/nauty: Update 27r1 -> 27r3
PR: 258237 Approved by: moritz@schmi.tt (maintainer)
This commit is contained in:
Yuri Victorovich
parent
242d3697fd
commit
ec6283ede7
@ -1,6 +1,6 @@
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PORTNAME= casadi
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DISTVERSION= 3.5.5
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PORTREVISION= 2
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PORTREVISION= 3
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CATEGORIES= math
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MAINTAINER= yuri@FreeBSD.org
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@ -1,7 +1,7 @@
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PORTNAME= cbc
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DISTVERSIONPREFIX= releases/
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DISTVERSION= 2.10.5
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PORTREVISION= 3
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PORTREVISION= 4
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CATEGORIES= math
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PKGNAMEPREFIX= coin-or-
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@ -1,7 +1,7 @@
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PORTNAME= couenne
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DISTVERSIONPREFIX= releases/
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DISTVERSION= 0.5.8
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PORTREVISION= 6
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PORTREVISION= 7
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CATEGORIES= math
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PKGNAMEPREFIX= coin-or-
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@ -11,7 +11,6 @@ COMMENT= Convex Over and Under Envelopes for NonliNear Estimation
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LICENSE= EPL
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LICENSE_FILE= ${WRKSRC}/Couenne/LICENSE
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BUILD_DEPENDS= ${LOCALBASE}/lib/libnauty.a:math/nauty
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LIB_DEPENDS= libbonmin.so:math/bonmin \
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libCbc.so:math/cbc \
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libCgl.so:math/cgl \
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@ -19,7 +18,9 @@ LIB_DEPENDS= libbonmin.so:math/bonmin \
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libcoinasl.so:math/asl \
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libCoinUtils.so:math/coinutils \
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libipopt.so:math/ipopt \
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libopenblas.so:math/openblas
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libnauty.so:math/nauty \
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libopenblas.so:math/openblas \
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libOsi.so:math/osi
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USES= blaslapack:netlib fortran gmake libtool pkgconfig
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USE_LDCONFIG= yes
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@ -29,7 +30,7 @@ GH_ACCOUNT= coin-or
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GH_PROJECT= Couenne
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GNU_CONFIGURE= yes
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CONFIGURE_ARGS= --with-nauty-incdir=${LOCALBASE}/include/nauty --with-nauty-lib=${LOCALBASE}/lib/libnauty.a
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CONFIGURE_ARGS= --with-nauty-incdir=${LOCALBASE}/include/nauty --with-nauty-lib=${LOCALBASE}/lib/libnauty.so # see https://github.com/coin-or/Couenne/issues/58
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INSTALL_TARGET= install-strip
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@ -1,6 +1,7 @@
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PORTNAME= disco
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DISTVERSIONPREFIX= releases/
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DISTVERSION= 1.0.0-33
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PORTREVISION= 1
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DISTVERSIONSUFFIX= -g68720be
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CATEGORIES= math
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PKGNAMEPREFIX= coin-or-
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@ -1,6 +1,7 @@
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# PORTNAME block
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PORTNAME= libnormaliz
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DISTVERSION= 3.9.0
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PORTREVISION= 1
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CATEGORIES= math
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MASTER_SITES= https://github.com/Normaliz/Normaliz/releases/download/v${PORTVERSION}/
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DISTNAME= normaliz-${PORTVERSION}
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@ -1,51 +1,67 @@
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# Created by: bremner@unb.ca
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PORTNAME= nauty
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PORTVERSION= 27r1
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PORTREVISION= 3
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PORTVERSION= 27r3
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CATEGORIES= math
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MASTER_SITES= https://users.cecs.anu.edu.au/~bdm/nauty/
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DISTNAME= ${PORTNAME}${PORTVERSION}
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MAINTAINER= moritz@schmi.tt
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COMMENT= Nauty & Traces are programs for computing graph automorphisms
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COMMENT= Nauty & Traces are programs for computing graph automorphism
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LICENSE= APACHE20
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USES= gmake
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GNU_CONFIGURE= yes
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CONFIGURE_ARGS= --enable-tls # math/libnormaliz requires nauty with tls
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CONFIGURE_ARGS= --enable-tls # this makes nauty thread-safe, math/libnormaliz requires nauty with tls
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MAKEFILE= makefile
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MAKE_ARGS= includedir=${PREFIX}/include/${PORTNAME} # place headers into a dedicated directory
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TEST_TARGET= check
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CFLAGS+= -fPIC
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OPTIONS_DEFINE= DOCS NATIVE
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OPTIONS_DEFINE= DOCS
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NATIVE_DESC= Build with native optimizations (-march=native, etc)
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NATIVE_CONFIGURE_ON= --disable-generic --enable-clz --enable-popcnt
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NATIVE_CONFIGURE_OFF= --enable-generic --disable-clz --disable-popcnt
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post-build:
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@cd ${WRKSRC} && ${CC} ${LDFLAGS} -shared -o libnauty.so \
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gtnauty.o gtools.o gutil1.o gutil2.o naugraph.o naugroup.o naurng.o nausparse.o nautil.o nautinv.o \
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naututil.o nauty.o nautycliquer.o schreier.o traces.o
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post-build: # build shared libraries: based on how static libraries are created
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# rebuild .o files with -fPIC
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@cd ${WRKSRC} ; \
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objects=$$(ls *.o) ; \
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${RM} $${objects} ; \
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${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${_MAKE_JOBS} ${MAKE_ARGS} FREEBSD_EXTRA_CFLAGS="-fPIC" $${objects}
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# build libraries
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cd ${WRKSRC} && ${CC} ${LDFLAGS} -shared -o libnauty.so -Wl,-soname,libnauty.so \
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nauty.o nautil.o nausparse.o naugraph.o schreier.o naurng.o traces.o gtools.o naututil.o \
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nautinv.o gutil1.o gutil2.o gtnauty.o naugroup.o nautycliquer.o
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cd ${WRKSRC} && ${CC} ${LDFLAGS} -shared -o libnauty1.so -Wl,-soname,libnauty1.so \
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nauty1.o nautil1.o nausparse.o naugraph1.o schreier.o naurng.o traces.o gtools.o naututil1.o \
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nautinv1.o gutil1.o gutil2.o gtnauty.o naugroup.o nautycliquer.o
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cd ${WRKSRC} && ${CC} ${LDFLAGS} -shared -o libnautyW.so -Wl,-soname,libnautyW.so \
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nautyW.o nautilW.o nausparseW.o naugraphW.o schreierW.o naurng.o traces.o gtoolsW.o naututilW.o \
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nautinvW.o gutil1W.o gutil2W.o gtnautyW.o naugroupW.o nautycliquerW.o
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cd ${WRKSRC} && ${CC} ${LDFLAGS} -shared -o libnautyW1.so -Wl,-soname,libnautyW1.so \
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nautyW1.o nautilW1.o nausparseW.o naugraphW1.o schreierW.o naurng.o traces.o gtoolsW.o naututilW1.o \
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nautinvW1.o gutil1W1.o gutil2W1.o gtnautyW1.o naugroupW.o nautycliquerW.o
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cd ${WRKSRC} && ${CC} ${LDFLAGS} -shared -o libnautyL.so -Wl,-soname,libnautyL.so \
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nautyL.o nautilL.o nausparseL.o naugraphL.o schreierL.o naurng.o traces.o gtoolsL.o naututilL.o \
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nautinvL.o gutil1L.o gutil2L.o gtnautyL.o naugroupL.o nautycliquerL.o
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cd ${WRKSRC} && ${CC} ${LDFLAGS} -shared -o libnautyL1.so -Wl,-soname,libnautyL1.so \
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nautyL1.o nautilL1.o nausparseL.o naugraphL1.o schreierL.o naurng.o traces.o gtoolsL.o naututilL1.o \
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nautinvL1.o gutil1L1.o gutil2L1.o gtnautyL1.o naugroupL.o nautycliquerL.o
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do-install:
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${MKDIR} ${STAGEDIR}${PREFIX}/include/nauty
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.for h in nauty.h nautycliquer.h nausparse.h traces.h naugroup.h
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${INSTALL_DATA} ${WRKSRC}/${h} ${STAGEDIR}${PREFIX}/include/nauty
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.endfor
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# Do not use ${INSTALL_LIB} to strip the library!
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${INSTALL_DATA} ${WRKSRC}/nauty.a ${STAGEDIR}${PREFIX}/lib/libnauty.a
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${INSTALL_LIB} ${WRKSRC}/libnauty.so ${STAGEDIR}${PREFIX}/lib
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.for e in \
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NRswitchg addedgeg amtog assembleg biplabg catg complg converseg copyg countg \
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cubhamg deledgeg delptg directg dreadnaut dretodot dretog edgetransg genbg genbgL \
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geng gengL genquarticg genrang genspecialg gentourng gentreeg hamheuristic labelg linegraphg \
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listg multig newedgeg pickg planarg ranlabg shortg showg subdivideg twohamg \
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underlyingg vcolg watercluster2
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${INSTALL_PROGRAM} ${WRKSRC}/${e} ${STAGEDIR}${PREFIX}/bin
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post-install:
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# install shared libraries
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.for l in libnauty.so libnauty1.so libnautyW.so libnautyW1.so libnautyL.so libnautyL1.so
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${INSTALL_LIB} ${WRKSRC}/${l} ${STAGEDIR}${PREFIX}/lib
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.endfor
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# correct the include path in .pc files
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@${REINPLACE_CMD} -i '' -e 's|-I$${includedir}|&/${PORTNAME}|' ${STAGEDIR}${PREFIX}/libdata/pkgconfig/*.pc
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# strip executables
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@${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/*
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do-install-DOCS-on:
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@${MKDIR} ${STAGEDIR}${DOCSDIR}
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@ -1,3 +1,3 @@
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TIMESTAMP = 1601648114
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SHA256 (nauty27r1.tar.gz) = 76ca5d196e402c83a987f90c28ff706bcc5a333bb4a8fbb979a62d3b99c34e77
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SIZE (nauty27r1.tar.gz) = 3428473
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TIMESTAMP = 1630783130
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SHA256 (nauty27r3.tar.gz) = 4f0665b716a53f7a14ea2ae30059f23d064ce3fe4c12c013404ef6e1ee0b88c2
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SIZE (nauty27r3.tar.gz) = 1721200
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13
math/nauty/files/patch-makefile.in
Normal file
13
math/nauty/files/patch-makefile.in
Normal file
@ -0,0 +1,13 @@
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- allow to add additional CFLAGS to build shared libraries
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--- makefile.in.orig 2021-09-03 17:45:35 UTC
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+++ makefile.in
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@@ -3,7 +3,7 @@
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SHELL=@SHELL@
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CC=@CC@
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-CFLAGS=@CFLAGS@ @MORECFLAGS@
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+CFLAGS=@CFLAGS@ @MORECFLAGS@ ${FREEBSD_EXTRA_CFLAGS}
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SAFECFLAGS=@CFLAGS@
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LDFLAGS=@LDFLAGS@ @LIBS@
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THREADLIB=@threadlib@
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@ -30,6 +30,7 @@ bin/labelg
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bin/linegraphg
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bin/listg
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bin/multig
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bin/nbrhoodg
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bin/newedgeg
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bin/pickg
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bin/planarg
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@ -41,11 +42,36 @@ bin/twohamg
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bin/underlyingg
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bin/vcolg
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bin/watercluster2
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include/nauty/gtools.h
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include/nauty/gutils.h
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include/nauty/naugroup.h
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include/nauty/naugstrings.h
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include/nauty/naurng.h
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include/nauty/nausparse.h
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include/nauty/nautinv.h
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include/nauty/naututil.h
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include/nauty/nauty.h
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include/nauty/nautycliquer.h
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include/nauty/planarity.h
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include/nauty/quarticirred28.h
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include/nauty/schreier.h
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include/nauty/traces.h
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lib/libnauty.a
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lib/libnauty.so
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lib/libnauty1.a
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lib/libnauty1.so
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lib/libnautyL.a
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lib/libnautyL.so
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lib/libnautyL1.a
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lib/libnautyL1.so
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lib/libnautyW.a
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lib/libnautyW.so
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lib/libnautyW1.a
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lib/libnautyW1.so
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libdata/pkgconfig/nauty.pc
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libdata/pkgconfig/nauty1.pc
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libdata/pkgconfig/nautyL.pc
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libdata/pkgconfig/nautyL1.pc
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libdata/pkgconfig/nautyW.pc
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libdata/pkgconfig/nautyW1.pc
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%%PORTDOCS%%%%DOCSDIR%%/nug27.pdf
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@ -1,6 +1,7 @@
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PORTNAME= or-tools
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DISTVERSIONPREFIX= v
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DISTVERSION= 9.0
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PORTREVISION= 1
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CATEGORIES= math
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MAINTAINER= yuri@FreeBSD.org
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@ -2,7 +2,7 @@
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PORTNAME= polymake
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DISTVERSION= 4.4
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PORTREVISION= 1
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PORTREVISION= 2
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CATEGORIES= math
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MASTER_SITES= https://polymake.org/lib/exe/fetch.php/download/
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DISTNAME= ${PORTNAME}-${DISTVERSION}-minimal
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@ -2,7 +2,7 @@
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PORTNAME= sage
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PORTVERSION= 9.2
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PORTREVISION= 18
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PORTREVISION= 19
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CATEGORIES= math
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MASTER_SITES= https://mirrors.xmission.com/sage/src/ \
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http://mirrors.xmission.com/sage/src/ \
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