add libgenome 0.5.0
Toolkit for developing bioinformatic related software in C++
This commit is contained in:
Ying-Chieh Liao
parent
47e6de9cc0
commit
e2e513a934
Notes:
svn2git
2021-03-31 03:12:20 +00:00
svn path=/head/; revision=63725
@ -24,6 +24,7 @@
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SUBDIR += hmmer
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SUBDIR += kinemage
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SUBDIR += lamarc
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SUBDIR += libgenome
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SUBDIR += migrate
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SUBDIR += molden
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SUBDIR += mopac
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26
biology/libgenome/Makefile
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26
biology/libgenome/Makefile
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@ -0,0 +1,26 @@
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# ex:ts=8
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# Ports collection makefile for: libgenome
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# Date created: Jul 30, 2002
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# Whom: ijliao
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#
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# $FreeBSD$
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#
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PORTNAME= libgenome
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PORTVERSION= 0.5.0
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CATEGORIES= biology
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MASTER_SITES= http://www.libgenome.org/releases/
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DISTNAME= libGenome-${PORTVERSION}
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MAINTAINER= ports@FreeBSD.org
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USE_LIBTOOL= yes
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INSTALLS_SHLIB= yes
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.if !defined(NOPORTDOCS)
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post-install:
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@${MKDIR} ${DOCSDIR}
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${CP} -R ${WRKSRC}/doc/html/* ${DOCSDIR}
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.endif
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.include <bsd.port.mk>
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1
biology/libgenome/distinfo
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1
biology/libgenome/distinfo
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@ -0,0 +1 @@
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MD5 (libGenome-0.5.0.tar.gz) = dc4351115328a4d10fb52850ee6675d1
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1
biology/libgenome/pkg-comment
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1
biology/libgenome/pkg-comment
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@ -0,0 +1 @@
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Toolkit for developing bioinformatic related software in C++
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12
biology/libgenome/pkg-descr
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12
biology/libgenome/pkg-descr
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@ -0,0 +1,12 @@
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libGenome is a freely available toolkit for developing bioinformatic related
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software in C++. It is intended to take the hassle out of performing common
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tasks on genetic sequence and annotation data.
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Among other things, libGenome can help you:
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- Read and write Multi-FastA format files
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- Read and write GenBank flat file database entries
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- Append, chop, truncate, reverse, complement, translate, and otherwise
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mangle sequence data
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- Access annotation in GenBank flat files
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WWW: http://www.libgenome.org/
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340
biology/libgenome/pkg-plist
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340
biology/libgenome/pkg-plist
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@ -0,0 +1,340 @@
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include/gn/gnABISource.h
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include/gn/gnBaseFeature.h
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include/gn/gnBaseFilter.h
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include/gn/gnBaseHeader.h
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include/gn/gnBaseQualifier.h
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include/gn/gnBaseSource.h
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include/gn/gnBaseSpec.h
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include/gn/gnClone.h
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include/gn/gnCompare.h
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include/gn/gnContigSpec.h
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include/gn/gnDNASequence.h
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include/gn/gnDNXSource.h
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include/gn/gnDataBaseSource.h
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include/gn/gnDebug.h
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include/gn/gnDefs.h
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include/gn/gnException.h
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include/gn/gnExceptionCode.h
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include/gn/gnFASSource.h
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include/gn/gnFastTranslator.h
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include/gn/gnFeature.h
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include/gn/gnFileContig.h
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include/gn/gnFileSource.h
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include/gn/gnFilter.h
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include/gn/gnFragmentSpec.h
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include/gn/gnGBKSource.h
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include/gn/gnGenomeSpec.h
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include/gn/gnLocation.h
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include/gn/gnMultiSpec.h
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include/gn/gnPosSpecificTranslator.h
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include/gn/gnProteinSequence.h
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include/gn/gnRAWSource.h
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include/gn/gnRNASequence.h
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include/gn/gnSEQSource.h
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include/gn/gnSequence.h
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include/gn/gnSetup.h
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include/gn/gnSourceFactory.h
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include/gn/gnSourceHeader.h
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include/gn/gnSourceQualifier.h
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include/gn/gnSourceSpec.h
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include/gn/gnStringHeader.h
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include/gn/gnStringQualifier.h
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include/gn/gnStringSpec.h
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include/gn/gnStringTools.h
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include/gn/gnTranslator.h
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include/gn/gnVersion.h
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@dirrm include/gn
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lib/libGenome.a
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lib/libGenome.la
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lib/libGenome.so
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lib/libGenome.so.0
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%%PORTDOCS%%share/doc/libgenome/GNPREC_8H-source.html
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%%PORTDOCS%%share/doc/libgenome/GNPREC_8H.html
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%%PORTDOCS%%share/doc/libgenome/Makefile
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%%PORTDOCS%%share/doc/libgenome/Makefile.am
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%%PORTDOCS%%share/doc/libgenome/Makefile.in
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%%PORTDOCS%%share/doc/libgenome/TestRevComp_8cpp-source.html
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%%PORTDOCS%%share/doc/libgenome/TestRevComp_8cpp.html
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%%PORTDOCS%%share/doc/libgenome/TestgpSeqConverter_8cpp-source.html
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%%PORTDOCS%%share/doc/libgenome/TestgpSeqConverter_8cpp.html
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%%PORTDOCS%%share/doc/libgenome/annotated.html
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%%PORTDOCS%%share/doc/libgenome/classes.html
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%%PORTDOCS%%share/doc/libgenome/classgnABISource-members.html
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%%PORTDOCS%%share/doc/libgenome/classgnABISource.gif
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%%PORTDOCS%%share/doc/libgenome/classgnABISource.html
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%%PORTDOCS%%share/doc/libgenome/classgnBaseFeature-members.html
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%%PORTDOCS%%share/doc/libgenome/classgnBaseFeature.gif
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%%PORTDOCS%%share/doc/libgenome/classgnBaseFeature.html
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%%PORTDOCS%%share/doc/libgenome/classgnBaseFilter-members.html
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%%PORTDOCS%%share/doc/libgenome/classgnBaseFilter.gif
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%%PORTDOCS%%share/doc/libgenome/classgnBaseFilter.html
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%%PORTDOCS%%share/doc/libgenome/classgnBaseHeader-members.html
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%%PORTDOCS%%share/doc/libgenome/classgnBaseHeader.gif
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%%PORTDOCS%%share/doc/libgenome/classgnBaseHeader.html
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%%PORTDOCS%%share/doc/libgenome/classgnBaseQualifier-members.html
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%%PORTDOCS%%share/doc/libgenome/classgnBaseQualifier.gif
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%%PORTDOCS%%share/doc/libgenome/classgnBaseQualifier.html
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%%PORTDOCS%%share/doc/libgenome/classgnBaseSource-members.html
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%%PORTDOCS%%share/doc/libgenome/classgnBaseSource.gif
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%%PORTDOCS%%share/doc/libgenome/classgnBaseSource.html
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%%PORTDOCS%%share/doc/libgenome/classgnBaseSpec-members.html
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%%PORTDOCS%%share/doc/libgenome/classgnBaseSpec.gif
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%%PORTDOCS%%share/doc/libgenome/classgnBaseSpec.html
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%%PORTDOCS%%share/doc/libgenome/classgnClone-members.html
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%%PORTDOCS%%share/doc/libgenome/classgnClone.gif
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%%PORTDOCS%%share/doc/libgenome/classgnClone.html
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%%PORTDOCS%%share/doc/libgenome/classgnCompare-members.html
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%%PORTDOCS%%share/doc/libgenome/classgnCompare.gif
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%%PORTDOCS%%share/doc/libgenome/classgnCompare.html
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%%PORTDOCS%%share/doc/libgenome/classgnContigSpec-members.html
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%%PORTDOCS%%share/doc/libgenome/classgnContigSpec.gif
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%%PORTDOCS%%share/doc/libgenome/classgnContigSpec.html
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%%PORTDOCS%%share/doc/libgenome/classgnDNASequence-members.html
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%%PORTDOCS%%share/doc/libgenome/classgnDNASequence.gif
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%%PORTDOCS%%share/doc/libgenome/classgnDNASequence.html
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%%PORTDOCS%%share/doc/libgenome/classgnDNXSource-members.html
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%%PORTDOCS%%share/doc/libgenome/classgnDNXSource.gif
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%%PORTDOCS%%share/doc/libgenome/classgnDNXSource.html
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%%PORTDOCS%%share/doc/libgenome/classgnDataBaseSource-members.html
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%%PORTDOCS%%share/doc/libgenome/classgnDataBaseSource.gif
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%%PORTDOCS%%share/doc/libgenome/classgnDataBaseSource.html
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%%PORTDOCS%%share/doc/libgenome/classgnFASSource-members.html
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%%PORTDOCS%%share/doc/libgenome/classgnFASSource.gif
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%%PORTDOCS%%share/doc/libgenome/classgnFASSource.html
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%%PORTDOCS%%share/doc/libgenome/classgnFeature-members.html
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%%PORTDOCS%%share/doc/libgenome/classgnFeature.gif
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%%PORTDOCS%%share/doc/libgenome/classgnFeature.html
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%%PORTDOCS%%share/doc/libgenome/classgnFileContig-members.html
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%%PORTDOCS%%share/doc/libgenome/classgnFileContig.gif
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%%PORTDOCS%%share/doc/libgenome/classgnFileContig.html
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%%PORTDOCS%%share/doc/libgenome/classgnFileSource-members.html
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%%PORTDOCS%%share/doc/libgenome/classgnFileSource.gif
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%%PORTDOCS%%share/doc/libgenome/classgnFileSource.html
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%%PORTDOCS%%share/doc/libgenome/classgnFilter-members.html
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%%PORTDOCS%%share/doc/libgenome/classgnFilter.gif
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%%PORTDOCS%%share/doc/libgenome/classgnFilter.html
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%%PORTDOCS%%share/doc/libgenome/classgnFragmentSpec-members.html
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%%PORTDOCS%%share/doc/libgenome/classgnFragmentSpec.gif
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%%PORTDOCS%%share/doc/libgenome/classgnFragmentSpec.html
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%%PORTDOCS%%share/doc/libgenome/classgnGBKSource-members.html
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%%PORTDOCS%%share/doc/libgenome/classgnGBKSource.gif
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%%PORTDOCS%%share/doc/libgenome/classgnGBKSource.html
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%%PORTDOCS%%share/doc/libgenome/classgnGenomeSpec-members.html
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%%PORTDOCS%%share/doc/libgenome/classgnGenomeSpec.gif
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%%PORTDOCS%%share/doc/libgenome/classgnGenomeSpec.html
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%%PORTDOCS%%share/doc/libgenome/classgnLocation-members.html
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%%PORTDOCS%%share/doc/libgenome/classgnLocation.gif
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%%PORTDOCS%%share/doc/libgenome/classgnLocation.html
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%%PORTDOCS%%share/doc/libgenome/classgnMultiSpec-members.html
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%%PORTDOCS%%share/doc/libgenome/classgnMultiSpec.gif
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%%PORTDOCS%%share/doc/libgenome/classgnMultiSpec.html
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%%PORTDOCS%%share/doc/libgenome/classgnProteinSequence-members.html
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%%PORTDOCS%%share/doc/libgenome/classgnProteinSequence.gif
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%%PORTDOCS%%share/doc/libgenome/classgnProteinSequence.html
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%%PORTDOCS%%share/doc/libgenome/classgnRAWSource-members.html
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%%PORTDOCS%%share/doc/libgenome/classgnRAWSource.gif
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%%PORTDOCS%%share/doc/libgenome/classgnRAWSource.html
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%%PORTDOCS%%share/doc/libgenome/classgnRNASequence-members.html
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%%PORTDOCS%%share/doc/libgenome/classgnRNASequence.gif
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%%PORTDOCS%%share/doc/libgenome/classgnRNASequence.html
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%%PORTDOCS%%share/doc/libgenome/classgnSEQSource-members.html
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%%PORTDOCS%%share/doc/libgenome/classgnSEQSource.gif
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%%PORTDOCS%%share/doc/libgenome/classgnSEQSource.html
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%%PORTDOCS%%share/doc/libgenome/classgnSequence-members.html
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%%PORTDOCS%%share/doc/libgenome/classgnSequence.gif
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%%PORTDOCS%%share/doc/libgenome/classgnSequence.html
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%%PORTDOCS%%share/doc/libgenome/classgnSourceFactory-members.html
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%%PORTDOCS%%share/doc/libgenome/classgnSourceFactory.html
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%%PORTDOCS%%share/doc/libgenome/classgnSourceHeader-members.html
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%%PORTDOCS%%share/doc/libgenome/classgnSourceHeader.gif
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%%PORTDOCS%%share/doc/libgenome/classgnSourceHeader.html
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%%PORTDOCS%%share/doc/libgenome/classgnSourceQualifier-members.html
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%%PORTDOCS%%share/doc/libgenome/classgnSourceQualifier.gif
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%%PORTDOCS%%share/doc/libgenome/classgnSourceQualifier.html
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%%PORTDOCS%%share/doc/libgenome/classgnSourceSpec-members.html
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%%PORTDOCS%%share/doc/libgenome/classgnSourceSpec.gif
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%%PORTDOCS%%share/doc/libgenome/classgnSourceSpec.html
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%%PORTDOCS%%share/doc/libgenome/classgnStringHeader-members.html
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%%PORTDOCS%%share/doc/libgenome/classgnStringHeader.gif
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%%PORTDOCS%%share/doc/libgenome/classgnStringHeader.html
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%%PORTDOCS%%share/doc/libgenome/classgnStringQualifier-members.html
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%%PORTDOCS%%share/doc/libgenome/classgnStringQualifier.gif
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%%PORTDOCS%%share/doc/libgenome/classgnStringQualifier.html
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%%PORTDOCS%%share/doc/libgenome/classgnStringSpec-members.html
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%%PORTDOCS%%share/doc/libgenome/classgnStringSpec.gif
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%%PORTDOCS%%share/doc/libgenome/classgnStringSpec.html
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%%PORTDOCS%%share/doc/libgenome/classgnTranslator-members.html
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%%PORTDOCS%%share/doc/libgenome/classgnTranslator.gif
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%%PORTDOCS%%share/doc/libgenome/classgnTranslator.html
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%%PORTDOCS%%share/doc/libgenome/doxygen.css
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%%PORTDOCS%%share/doc/libgenome/doxygen.gif
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%%PORTDOCS%%share/doc/libgenome/files.html
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%%PORTDOCS%%share/doc/libgenome/functions.html
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%%PORTDOCS%%share/doc/libgenome/globals.html
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%%PORTDOCS%%share/doc/libgenome/gnABISource_8cpp-source.html
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%%PORTDOCS%%share/doc/libgenome/gnABISource_8cpp.html
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%%PORTDOCS%%share/doc/libgenome/gnABISource_8h-source.html
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%%PORTDOCS%%share/doc/libgenome/gnABISource_8h.html
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%%PORTDOCS%%share/doc/libgenome/gnBaseFeature_8cpp-source.html
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%%PORTDOCS%%share/doc/libgenome/gnBaseFeature_8cpp.html
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%%PORTDOCS%%share/doc/libgenome/gnBaseFeature_8h-source.html
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%%PORTDOCS%%share/doc/libgenome/gnBaseFeature_8h.html
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%%PORTDOCS%%share/doc/libgenome/gnBaseFilter_8h-source.html
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%%PORTDOCS%%share/doc/libgenome/gnBaseFilter_8h.html
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%%PORTDOCS%%share/doc/libgenome/gnBaseHeader_8h-source.html
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%%PORTDOCS%%share/doc/libgenome/gnBaseHeader_8h.html
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%%PORTDOCS%%share/doc/libgenome/gnBaseQualifier_8h-source.html
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%%PORTDOCS%%share/doc/libgenome/gnBaseQualifier_8h.html
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%%PORTDOCS%%share/doc/libgenome/gnBaseSource_8h-source.html
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%%PORTDOCS%%share/doc/libgenome/gnBaseSource_8h.html
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%%PORTDOCS%%share/doc/libgenome/gnBaseSpec_8h-source.html
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%%PORTDOCS%%share/doc/libgenome/gnBaseSpec_8h.html
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%%PORTDOCS%%share/doc/libgenome/gnClone_8h-source.html
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%%PORTDOCS%%share/doc/libgenome/gnClone_8h.html
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%%PORTDOCS%%share/doc/libgenome/gnCompare_8cpp-source.html
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%%PORTDOCS%%share/doc/libgenome/gnCompare_8cpp.html
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%%PORTDOCS%%share/doc/libgenome/gnCompare_8h-source.html
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%%PORTDOCS%%share/doc/libgenome/gnCompare_8h.html
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%%PORTDOCS%%share/doc/libgenome/gnContigSpec_8cpp-source.html
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%%PORTDOCS%%share/doc/libgenome/gnContigSpec_8cpp.html
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%%PORTDOCS%%share/doc/libgenome/gnContigSpec_8h-source.html
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%%PORTDOCS%%share/doc/libgenome/gnContigSpec_8h.html
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%%PORTDOCS%%share/doc/libgenome/gnDNASequence_8h-source.html
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%%PORTDOCS%%share/doc/libgenome/gnDNASequence_8h.html
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%%PORTDOCS%%share/doc/libgenome/gnDNXSource_8cpp-source.html
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%%PORTDOCS%%share/doc/libgenome/gnDNXSource_8cpp.html
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%%PORTDOCS%%share/doc/libgenome/gnDNXSource_8h-source.html
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%%PORTDOCS%%share/doc/libgenome/gnDNXSource_8h.html
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%%PORTDOCS%%share/doc/libgenome/gnDataBaseSource_8h-source.html
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%%PORTDOCS%%share/doc/libgenome/gnDataBaseSource_8h.html
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%%PORTDOCS%%share/doc/libgenome/gnDebug_8h-source.html
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%%PORTDOCS%%share/doc/libgenome/gnDebug_8h.html
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%%PORTDOCS%%share/doc/libgenome/gnDefs_8h-source.html
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%%PORTDOCS%%share/doc/libgenome/gnDefs_8h.html
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%%PORTDOCS%%share/doc/libgenome/gnFASSource_8cpp-source.html
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%%PORTDOCS%%share/doc/libgenome/gnFASSource_8cpp.html
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%%PORTDOCS%%share/doc/libgenome/gnFASSource_8h-source.html
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%%PORTDOCS%%share/doc/libgenome/gnFASSource_8h.html
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%%PORTDOCS%%share/doc/libgenome/gnFeature_8cpp-source.html
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%%PORTDOCS%%share/doc/libgenome/gnFeature_8cpp.html
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%%PORTDOCS%%share/doc/libgenome/gnFeature_8h-source.html
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%%PORTDOCS%%share/doc/libgenome/gnFeature_8h.html
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%%PORTDOCS%%share/doc/libgenome/gnFileContig_8cpp-source.html
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%%PORTDOCS%%share/doc/libgenome/gnFileContig_8cpp.html
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%%PORTDOCS%%share/doc/libgenome/gnFileContig_8h-source.html
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%%PORTDOCS%%share/doc/libgenome/gnFileContig_8h.html
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%%PORTDOCS%%share/doc/libgenome/gnFileSource_8cpp-source.html
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%%PORTDOCS%%share/doc/libgenome/gnFileSource_8cpp.html
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%%PORTDOCS%%share/doc/libgenome/gnFileSource_8h-source.html
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%%PORTDOCS%%share/doc/libgenome/gnFileSource_8h.html
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%%PORTDOCS%%share/doc/libgenome/gnFilter_8cpp-source.html
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%%PORTDOCS%%share/doc/libgenome/gnFilter_8cpp.html
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%%PORTDOCS%%share/doc/libgenome/gnFilter_8h-source.html
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%%PORTDOCS%%share/doc/libgenome/gnFilter_8h.html
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%%PORTDOCS%%share/doc/libgenome/gnFragmentSpec_8cpp-source.html
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%%PORTDOCS%%share/doc/libgenome/gnFragmentSpec_8cpp.html
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%%PORTDOCS%%share/doc/libgenome/gnFragmentSpec_8h-source.html
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%%PORTDOCS%%share/doc/libgenome/gnFragmentSpec_8h.html
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%%PORTDOCS%%share/doc/libgenome/gnGBKSource_8cpp-source.html
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%%PORTDOCS%%share/doc/libgenome/gnGBKSource_8cpp.html
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%%PORTDOCS%%share/doc/libgenome/gnGBKSource_8h-source.html
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%%PORTDOCS%%share/doc/libgenome/gnGBKSource_8h.html
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%%PORTDOCS%%share/doc/libgenome/gnGenomeSpec_8cpp-source.html
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%%PORTDOCS%%share/doc/libgenome/gnGenomeSpec_8cpp.html
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%%PORTDOCS%%share/doc/libgenome/gnGenomeSpec_8h-source.html
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%%PORTDOCS%%share/doc/libgenome/gnGenomeSpec_8h.html
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%%PORTDOCS%%share/doc/libgenome/gnLocation_8cpp-source.html
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%%PORTDOCS%%share/doc/libgenome/gnLocation_8cpp.html
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%%PORTDOCS%%share/doc/libgenome/gnLocation_8h-source.html
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%%PORTDOCS%%share/doc/libgenome/gnLocation_8h.html
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%%PORTDOCS%%share/doc/libgenome/gnMultiSpec_8cpp-source.html
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%%PORTDOCS%%share/doc/libgenome/gnMultiSpec_8cpp.html
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%%PORTDOCS%%share/doc/libgenome/gnMultiSpec_8h-source.html
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%%PORTDOCS%%share/doc/libgenome/gnMultiSpec_8h.html
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%%PORTDOCS%%share/doc/libgenome/gnProteinSequence_8h-source.html
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%%PORTDOCS%%share/doc/libgenome/gnProteinSequence_8h.html
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%%PORTDOCS%%share/doc/libgenome/gnRAWSource_8cpp-source.html
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%%PORTDOCS%%share/doc/libgenome/gnRAWSource_8cpp.html
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%%PORTDOCS%%share/doc/libgenome/gnRAWSource_8h-source.html
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%%PORTDOCS%%share/doc/libgenome/gnRAWSource_8h.html
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%%PORTDOCS%%share/doc/libgenome/gnRNASequence_8h-source.html
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%%PORTDOCS%%share/doc/libgenome/gnRNASequence_8h.html
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%%PORTDOCS%%share/doc/libgenome/gnSEQSource_8cpp-source.html
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%%PORTDOCS%%share/doc/libgenome/gnSEQSource_8cpp.html
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%%PORTDOCS%%share/doc/libgenome/gnTranslator_8cpp-source.html
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%%PORTDOCS%%share/doc/libgenome/hierarchy.html
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%%PORTDOCS%%share/doc/libgenome/namespaces.html
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%%PORTDOCS%%share/doc/libgenome/test-o-matic_8cpp-source.html
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%%PORTDOCS%%share/doc/libgenome/testSourceFactory_8cpp-source.html
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%%PORTDOCS%%share/doc/libgenome/testSourceSeq_8cpp-source.html
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%%PORTDOCS%%share/doc/libgenome/testSourceSeq_8cpp.html
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%%PORTDOCS%%share/doc/libgenome/testSource_8cpp-source.html
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%%PORTDOCS%%share/doc/libgenome/testSource_8cpp.html
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%%PORTDOCS%%share/doc/libgenome/testTests_8cpp-source.html
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%%PORTDOCS%%share/doc/libgenome/testTests_8cpp.html
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%%PORTDOCS%%share/doc/libgenome/testgpSequence_8cpp-source.html
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%%PORTDOCS%%share/doc/libgenome/testgpSequence_8cpp.html
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%%PORTDOCS%%@dirrm share/doc/libgenome
|
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Loading…
Reference in New Issue
Block a user